Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_H22
(290 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0314 + 2255908-2255979,2256354-2256512,2257021-2257209,225... 29 0.83
05_06_0228 + 26570066-26571352 28 1.4
01_05_0768 + 25036945-25037296,25037499-25037722,25037902-250379... 27 3.3
02_04_0188 - 20766093-20766449,20766526-20766624,20766717-207668... 26 4.4
12_01_0740 + 6646471-6649407 26 5.8
12_01_0722 + 6355972-6359031 26 5.8
04_04_0819 - 28312667-28313219,28315157-28316430 26 5.8
04_04_0808 - 28196563-28196735,28197369-28197440,28197540-281976... 26 5.8
02_03_0075 + 14846108-14847794,14847858-14848249 26 5.8
10_01_0165 - 1869312-1869449,1870486-1872326,1872356-1872719 25 7.7
04_04_1036 + 30305548-30305588,30305710-30305761,30306408-303064... 25 7.7
04_03_0983 + 21423086-21423280,21423330-21423404,21423531-214236... 25 7.7
01_03_0284 - 14595643-14595663,14595978-14596018,14596379-145967... 25 7.7
>06_01_0314 +
2255908-2255979,2256354-2256512,2257021-2257209,
2257390-2257561,2257711-2257784,2257818-2257904,
2257975-2257998,2258100-2258225
Length = 300
Score = 28.7 bits (61), Expect = 0.83
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = -1
Query: 266 IHSYILIVNKCFIIMDFNCPYMMRVHINMYIWEYLFYNIYTSNQSL 129
I++ I +N C D CP +++ IN+ +WE+ +Y Y ++ +
Sbjct: 222 INNSIPSINLCD---DIPCPLLLQPLINLDLWEHAYYLDYKDDRRM 264
>05_06_0228 + 26570066-26571352
Length = 428
Score = 27.9 bits (59), Expect = 1.4
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 86 NWKIPGFQTISIPNFIRFSQV 24
N KI GFQT+ +PN R + V
Sbjct: 119 NLKIDGFQTLDLPNLARVNSV 139
>01_05_0768 +
25036945-25037296,25037499-25037722,25037902-25037955,
25038006-25038253,25038909-25039296,25039392-25039802,
25039919-25040077,25040632-25040979
Length = 727
Score = 26.6 bits (56), Expect = 3.3
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -1
Query: 146 TSNQSLLFCPQGYRWDLRNENWKIPGFQTISIPNFIRFSQVVF 18
T N L+ CP+ ++W W + I +PNF+ F++ F
Sbjct: 633 TINNLLVACPESWQW------WWF-ALRAIRLPNFLPFNEASF 668
>02_04_0188 -
20766093-20766449,20766526-20766624,20766717-20766821,
20769149-20769241,20769673-20769765,20770075-20770176,
20770294-20770368,20770465-20770584
Length = 347
Score = 26.2 bits (55), Expect = 4.4
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = -1
Query: 134 SLLFCPQGYRWDLRNENWKIPGFQTISIPNFIRFSQVVFTYT 9
++ + P+G + D N +I +++ PN IRF +VV T T
Sbjct: 31 AMKYIPRGLKID-ENVAREIINHRSLRHPNIIRFKEVVLTPT 71
>12_01_0740 + 6646471-6649407
Length = 978
Score = 25.8 bits (54), Expect = 5.8
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -2
Query: 124 FARRVTVGIYGMKTGKYLDFKLSLFQISSD 35
FA RV VGI +K+ YLD + F D
Sbjct: 118 FAGRVPVGIGRLKSLAYLDLSTTFFLYEQD 147
>12_01_0722 + 6355972-6359031
Length = 1019
Score = 25.8 bits (54), Expect = 5.8
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 124 FARRVTVGIYGMKTGKYLDFKLSLFQISSD 35
FA RV VGI +K+ YLD + F+ D
Sbjct: 159 FAGRVPVGIGRLKSLAYLDLSTTFFEDELD 188
>04_04_0819 - 28312667-28313219,28315157-28316430
Length = 608
Score = 25.8 bits (54), Expect = 5.8
Identities = 15/56 (26%), Positives = 23/56 (41%)
Frame = -1
Query: 188 INMYIWEYLFYNIYTSNQSLLFCPQGYRWDLRNENWKIPGFQTISIPNFIRFSQVV 21
IN++ + N L C + Y W LR + G + +PNF F +V
Sbjct: 309 INLFFTMPVMMNPVYEVAERLLCRKRYAWWLRWLLVMVVGLMAMLVPNFADFLSLV 364
>04_04_0808 - 28196563-28196735,28197369-28197440,28197540-28197666,
28198362-28198430,28198517-28198583,28198751-28198872,
28199302-28199412,28199596-28199661,28200156-28200213,
28200307-28200343,28200420-28200513,28200967-28201032,
28201139-28201203,28201352-28201496,28201925-28202074,
28202266-28202335,28202752-28202828,28202919-28202987,
28203798-28203881,28204018-28204061,28204172-28204273,
28204420-28204618,28204672-28204727,28204886-28204958,
28205685-28205771,28205863-28205976,28206985-28207092,
28207183-28207278,28207722-28207787,28208130-28208222,
28208429-28208512,28208961-28209078,28209191-28209267,
28209459-28209641,28210542-28210636,28210903-28211053,
28212218-28212325,28212513-28212612,28212788-28212840,
28214022-28214102
Length = 1269
Score = 25.8 bits (54), Expect = 5.8
Identities = 9/43 (20%), Positives = 24/43 (55%)
Frame = -1
Query: 284 IISKAIIHSYILIVNKCFIIMDFNCPYMMRVHINMYIWEYLFY 156
+++ ++ S I+++ I++D PY+ V + Y++ + Y
Sbjct: 978 VVTSSLWASIIILIVLAMIVLDLMAPYIALVALLTYVYWFPVY 1020
>02_03_0075 + 14846108-14847794,14847858-14848249
Length = 692
Score = 25.8 bits (54), Expect = 5.8
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 161 FYNIYTSNQSLLFCPQGYRWDLRNE 87
FY++ T N S LF G W LR++
Sbjct: 287 FYSLRTPNLSALFEDMGRAWRLRSD 311
>10_01_0165 - 1869312-1869449,1870486-1872326,1872356-1872719
Length = 780
Score = 25.4 bits (53), Expect = 7.7
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +3
Query: 18 KNYLTESDEIWNRDSLK 68
K YL D +WNRDS K
Sbjct: 251 KKYLIVLDHVWNRDSDK 267
>04_04_1036 +
30305548-30305588,30305710-30305761,30306408-30306487,
30307035-30307110,30307169-30307252,30307356-30307501,
30307608-30307826,30308180-30308271,30308677-30308867,
30309100-30309706,30309811-30310004
Length = 593
Score = 25.4 bits (53), Expect = 7.7
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +2
Query: 65 EIQVFSSFHSVNPNGNPAG 121
+I V SSF V PNG AG
Sbjct: 109 KISVLSSFEYVEPNGKDAG 127
>04_03_0983 +
21423086-21423280,21423330-21423404,21423531-21423632,
21423721-21423774,21423880-21423972,21424526-21424618,
21427329-21427433,21427517-21427615,21427701-21427997,
21428512-21428622
Length = 407
Score = 25.4 bits (53), Expect = 7.7
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -1
Query: 107 RWDLRNENWKIPGFQTISIPNFIRFSQVVFTYT 9
RW N +I +++ PN IRF +VV T T
Sbjct: 64 RWIDENVAREIINHRSLRHPNIIRFKEVVVTPT 96
>01_03_0284 -
14595643-14595663,14595978-14596018,14596379-14596732,
14597023-14597494,14597524-14600001
Length = 1121
Score = 25.4 bits (53), Expect = 7.7
Identities = 10/20 (50%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Frame = +3
Query: 12 IC-KNYLTESDEIWNRDSLK 68
+C K YL D++WNRD+ K
Sbjct: 267 VCGKRYLLVLDDVWNRDADK 286
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,110,403
Number of Sequences: 37544
Number of extensions: 134043
Number of successful extensions: 305
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 305
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 316296968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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