Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_H22
         (290 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038608-4|AAU05594.2|  310|Caenorhabditis elegans Serpentine re...    31   0.18 
AF039044-4|AAG24122.3|  328|Caenorhabditis elegans Serpentine re...    30   0.32 
U42844-4|ABM01868.1|  739|Caenorhabditis elegans Hypothetical pr...    28   0.97 
Z77665-1|CAB01220.1|  339|Caenorhabditis elegans Hypothetical pr...    27   2.2  
U97189-5|AAC48163.1|  206|Caenorhabditis elegans Hypothetical pr...    27   2.2  
Z83232-1|CAB05755.3| 1764|Caenorhabditis elegans Hypothetical pr...    27   3.0  
Z71177-7|CAI46554.1|  351|Caenorhabditis elegans Hypothetical pr...    27   3.0  
AL033514-39|CAA22095.2|  401|Caenorhabditis elegans Hypothetical...    27   3.0  
AB162421-1|BAD36749.1| 1766|Caenorhabditis elegans plexin protein.     27   3.0  
U55364-9|AAA97974.1|  141|Caenorhabditis elegans Hypothetical pr...    26   3.9  
AF077544-2|AAK39243.2|  644|Caenorhabditis elegans Hypothetical ...    26   5.2  
Z81526-6|CAB04263.1| 2144|Caenorhabditis elegans Hypothetical pr...    25   6.8  
Z79600-1|CAB01873.1|  239|Caenorhabditis elegans Hypothetical pr...    25   6.8  
Z77661-1|CAB01186.1|  341|Caenorhabditis elegans Hypothetical pr...    25   6.8  
Z68335-2|CAA92731.1|  390|Caenorhabditis elegans Hypothetical pr...    25   9.1  
U97189-4|AAC48167.3| 2322|Caenorhabditis elegans Suppressor with...    25   9.1  
U97189-3|AAT68901.1| 2019|Caenorhabditis elegans Suppressor with...    25   9.1  
U21322-8|AAA62544.1|  662|Caenorhabditis elegans Abnormal embroy...    25   9.1  
AF149821-1|AAD48773.1| 2322|Caenorhabditis elegans nonsense-medi...    25   9.1  

>AF038608-4|AAU05594.2|  310|Caenorhabditis elegans Serpentine
           receptor, class z protein37 protein.
          Length = 310

 Score = 30.7 bits (66), Expect = 0.18
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 171 PNIHIYMYPHHIRTIKIHYYKTFVNY*YITMYNCFA 278
           P+I+I+     +   KIH+ K F++Y Y     CF+
Sbjct: 217 PHIYIFWQSIVVVVFKIHFIKEFISYLYFDYVYCFS 252


>AF039044-4|AAG24122.3|  328|Caenorhabditis elegans Serpentine
           receptor, class t protein17 protein.
          Length = 328

 Score = 29.9 bits (64), Expect = 0.32
 Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -2

Query: 157 IIYIQVTNLCY-FARRVTVGIYGMKTGKYLDFKLSLFQISS 38
           +I++ + ++C  F   +T GI+G+    Y DF L +F + S
Sbjct: 84  MIFLGICDICSTFVHSITTGIFGIMGVVYCDFPLVIFILGS 124


>U42844-4|ABM01868.1|  739|Caenorhabditis elegans Hypothetical
           protein C08A9.3 protein.
          Length = 739

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -1

Query: 215 NCPYMMRVHINMYIWEYLFY 156
           NCP+   +H++MY   ++FY
Sbjct: 466 NCPHRTTIHLDMYTSSWIFY 485


>Z77665-1|CAB01220.1|  339|Caenorhabditis elegans Hypothetical
           protein K02E11.2 protein.
          Length = 339

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -3

Query: 87  KLENTWISNYLYSKFHPIQSSSFYIYTSC 1
           K    W+S  + S FHP+  +S + Y  C
Sbjct: 137 KSRKIWVSLIILSIFHPLVFASAFAYIQC 165


>U97189-5|AAC48163.1|  206|Caenorhabditis elegans Hypothetical
          protein C48B6.3 protein.
          Length = 206

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 6  RCICKNYLTESDEIWN 53
          RC C   LTE+D++WN
Sbjct: 18 RCDCTEDLTENDKLWN 33


>Z83232-1|CAB05755.3| 1764|Caenorhabditis elegans Hypothetical protein
            K04B12.1 protein.
          Length = 1764

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 87   KLENTWISNYLYSKFHPIQSSSFYIY 10
            K+ + W+S  LYS   P  +S FY+Y
Sbjct: 1309 KMFSKWMSICLYSHLTPQMNSYFYLY 1334


>Z71177-7|CAI46554.1|  351|Caenorhabditis elegans Hypothetical
           protein AC3.10 protein.
          Length = 351

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -1

Query: 239 KCFIIMDFNCPY--MMRVHINMYIWEYLFYNIYTS 141
           KC I  D +CP+  M   H+N Y + +L Y IYTS
Sbjct: 175 KCCIKYDHHCPWINMCVTHVN-YKY-FLLYIIYTS 207


>AL033514-39|CAA22095.2|  401|Caenorhabditis elegans Hypothetical
           protein Y75B8A.5 protein.
          Length = 401

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -1

Query: 185 NMYIWEYL--FYNIYTSNQSLLFCPQGYRWDLRNENWKIPGFQTISIPN 45
           N++IW+ L  F+ +  SN     CP G + D   +     G Q +++P+
Sbjct: 14  NIFIWKLLILFHFLKYSNALRDTCPMGCQCDEDKQQVTCEGQQVVTLPD 62


>AB162421-1|BAD36749.1| 1766|Caenorhabditis elegans plexin protein.
          Length = 1766

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 87   KLENTWISNYLYSKFHPIQSSSFYIY 10
            K+ + W+S  LYS   P  +S FY+Y
Sbjct: 1311 KMFSKWMSICLYSHLTPQMNSYFYLY 1336


>U55364-9|AAA97974.1|  141|Caenorhabditis elegans Hypothetical
           protein F21C10.6 protein.
          Length = 141

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 129 VILPAGLPLGFTE*KLENTWISNYLYSKFHP 37
           VI+   LP+ +   K++  W  NY+Y   HP
Sbjct: 58  VIITPSLPIKYN--KIKYYWYGNYVYDAGHP 86


>AF077544-2|AAK39243.2|  644|Caenorhabditis elegans Hypothetical
           protein H22K11.2 protein.
          Length = 644

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 137 GYLYIYYKINIPKYTYLYVPSSYKDN 214
           GY YIYY   I +   LY+P ++ DN
Sbjct: 415 GYGYIYYNTTIIECGSLYIP-TFADN 439


>Z81526-6|CAB04263.1| 2144|Caenorhabditis elegans Hypothetical
           protein F33H2.5 protein.
          Length = 2144

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = -1

Query: 248 IVNKCFIIMDFNCPYMMRVHINMYIWEYLFYNI 150
           I+N+   I +++ P+ MRV I+  I+  L+Y++
Sbjct: 198 ILNQIVDIREYDVPFHMRVSIDEKIFVGLWYDV 230


>Z79600-1|CAB01873.1|  239|Caenorhabditis elegans Hypothetical
           protein F59C6.2 protein.
          Length = 239

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
 Frame = -1

Query: 260 SYILIVNKCFIIMDFNCPYM---MRVHINMYIWEYLFY-NIYTSNQSLLFCPQGYRW-DL 96
           S+    +KC   MD +CP++   +  H   + + +LFY  I T    L+      +W + 
Sbjct: 54  SHCKACDKCIYRMDHHCPHIGQCVGAHNQSHFFLFLFYLQIATGLFFLMATTFWMKWIET 113

Query: 95  RNENWKIPGFQ 63
           R E   IP  Q
Sbjct: 114 RKELTAIPDDQ 124


>Z77661-1|CAB01186.1|  341|Caenorhabditis elegans Hypothetical
           protein F40G12.1 protein.
          Length = 341

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -3

Query: 87  KLENTWISNYLYSKFHPIQSSSFYIYTSC 1
           K    W+S  + S FHP+  +S   Y  C
Sbjct: 139 KSRKIWVSLMILSIFHPLVFASAIAYIQC 167


>Z68335-2|CAA92731.1|  390|Caenorhabditis elegans Hypothetical
           protein C29F4.3 protein.
          Length = 390

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 92  NENWKIPGFQTISIPNF 42
           N N+ IP FQ ++IP F
Sbjct: 347 NHNFSIPHFQHVTIPRF 363


>U97189-4|AAC48167.3| 2322|Caenorhabditis elegans Suppressor with
            morphological effecton genitalia protein 1, isoform a
            protein.
          Length = 2322

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = -1

Query: 278  SKAIIHSYILIVNKCFIIMDFNCPYMMRVHINMYIWEY 165
            S ++   Y  IV   F +    CP + + H+ M  W Y
Sbjct: 1309 SDSLSAGYHGIVGSLFHLASEMCPSLAKAHLKMARWAY 1346


>U97189-3|AAT68901.1| 2019|Caenorhabditis elegans Suppressor with
            morphological effecton genitalia protein 1, isoform b
            protein.
          Length = 2019

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = -1

Query: 278  SKAIIHSYILIVNKCFIIMDFNCPYMMRVHINMYIWEY 165
            S ++   Y  IV   F +    CP + + H+ M  W Y
Sbjct: 1309 SDSLSAGYHGIVGSLFHLASEMCPSLAKAHLKMARWAY 1346


>U21322-8|AAA62544.1|  662|Caenorhabditis elegans Abnormal
           embroygenesis protein 8 protein.
          Length = 662

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 116 AGKITEIGYLYIYYKINIPKYTYLY 190
           AGK  EIG +++YY    P + Y+Y
Sbjct: 538 AGK--EIGAMHLYYGCRHPDHDYIY 560


>AF149821-1|AAD48773.1| 2322|Caenorhabditis elegans nonsense-mediated
            mRNA decay proteinSMG-1 protein.
          Length = 2322

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = -1

Query: 278  SKAIIHSYILIVNKCFIIMDFNCPYMMRVHINMYIWEY 165
            S ++   Y  IV   F +    CP + + H+ M  W Y
Sbjct: 1309 SDSLSAGYHGIVGSLFHLASEMCPSLAKAHLKMARWAY 1346


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,905,399
Number of Sequences: 27780
Number of extensions: 146429
Number of successful extensions: 396
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 396
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 280685548
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)