Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_H21
         (260 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc...    25   2.2  
SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces ...    24   2.9  
SPCC338.07c |||NatA N-acetyltransferase complex subunit |Schizos...    24   2.9  
SPAC869.11 ||SPAC922.08c|amino acid permease, unknown 6|Schizosa...    24   3.8  
SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyce...    23   5.1  
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo...    23   6.7  
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc...    23   8.8  
SPAC323.07c |||MatE family transporter|Schizosaccharomyces pombe...    23   8.8  

>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 919

 Score = 24.6 bits (51), Expect = 2.2
 Identities = 17/64 (26%), Positives = 31/64 (48%)
 Frame = +1

Query: 7   GLKTVINIVLMVGYKYLTHSDTYLNKHIR*TDVKVRIQSKFIFVKNYSFFKDYTAEAFKC 186
           GL TVI IVL +G  ++T++        R       +Q + +F++  S  +++     +C
Sbjct: 755 GLSTVIGIVLAIG-TWITNTTMIAQGQNRGIVQNFGVQDEVLFLE-ISLTENWLIFVTRC 812

Query: 187 NSNF 198
           N  F
Sbjct: 813 NGPF 816


>SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 24.2 bits (50), Expect = 2.9
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -2

Query: 100 LSTEYV-YLNMYHYELNTYIPPLI 32
           LS E V YLN YH E+ T + P++
Sbjct: 560 LSPEEVKYLNEYHSEVYTTLSPML 583


>SPCC338.07c |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 729

 Score = 24.2 bits (50), Expect = 2.9
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = +1

Query: 43  GYKYLTHSDTYLNKHIR*TDVKVRIQSKFIFVKNYSFFKD 162
           G ++LTH D YL K +     K  I S F+ VK  S +KD
Sbjct: 308 GDEFLTHVDLYLRKKL-----KRGIPSVFVDVK--SLYKD 340


>SPAC869.11 ||SPAC922.08c|amino acid permease, unknown
           6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 23.8 bits (49), Expect = 3.8
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +1

Query: 4   RGLKTVINIVLMVGYKYLTHSDTY 75
           +GL +V N V+++    +T+S TY
Sbjct: 351 KGLPSVFNAVIIISVVSVTNSSTY 374


>SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 579

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +1

Query: 4   RGLKTVINIVLMVGYKYLTHSDTY 75
           +GL +V N V+++    +T+S TY
Sbjct: 351 KGLPSVFNAVIIISVISVTNSSTY 374


>SPCC777.13 |vps35||retromer complex subunit
           Vps35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 10  LKTVINIVLMVGYKYLTHSDTYLNKHI 90
           LK  INI+    Y Y  H ++ + KHI
Sbjct: 688 LKLFINILERYFYYYDQHCESIIAKHI 714


>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
           Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 100 DVKVRIQSKFIFVKNYSFFKDYTAE 174
           D +V  Q     +KN+SF  DY A+
Sbjct: 173 DYQVSSQVYHNVLKNFSFLSDYKAD 197


>SPAC323.07c |||MatE family transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 7/32 (21%), Positives = 19/32 (59%)
 Frame = -2

Query: 118 VSSLLHLSTEYVYLNMYHYELNTYIPPLIQYL 23
           + ++LH+    ++LN+ H  +  +  P++ +L
Sbjct: 178 ILAVLHIPVALIWLNLEHILIFLHQDPMVAHL 209


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 952,145
Number of Sequences: 5004
Number of extensions: 15663
Number of successful extensions: 34
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 51430850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)