Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_H21
         (260 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23178-1|AAK68301.1| 1280|Caenorhabditis elegans Guanylyl cyclas...    26   4.2  
Z75553-1|CAA99947.2|  320|Caenorhabditis elegans Hypothetical pr...    25   5.6  
Z77658-3|CAB01159.1|  112|Caenorhabditis elegans Hypothetical pr...    25   7.4  
AF040645-13|AAB94983.1|  148|Caenorhabditis elegans Hypothetical...    25   9.8  

>U23178-1|AAK68301.1| 1280|Caenorhabditis elegans Guanylyl cyclase
           protein 12 protein.
          Length = 1280

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 109 LLHLSTEYVYLNMYHYELNTYIPPLIQYL 23
           L+++ T Y +LN+YH   N ++   + YL
Sbjct: 360 LIYVDTNYDWLNVYHSMNNHFLRNTMTYL 388


>Z75553-1|CAA99947.2|  320|Caenorhabditis elegans Hypothetical
           protein ZC443.1 protein.
          Length = 320

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 13  KTVINIVLMVGYKYLTHSDTYLNKH 87
           KTVI   ++ GY+++  +  Y N+H
Sbjct: 32  KTVIRNAVLAGYRHIDTATLYQNEH 56


>Z77658-3|CAB01159.1|  112|Caenorhabditis elegans Hypothetical
           protein F14D7.3 protein.
          Length = 112

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 10/42 (23%), Positives = 21/42 (50%)
 Frame = -2

Query: 151 MNNFSQK*ISTVSSLLHLSTEYVYLNMYHYELNTYIPPLIQY 26
           +NN  Q  +   +S +H  T Y Y+ +   +++ ++   I Y
Sbjct: 9   LNNVEQNAVEKCNSEVHYETSYCYMTLLPGKISCFLIYQISY 50


>AF040645-13|AAB94983.1|  148|Caenorhabditis elegans Hypothetical
           protein F52C6.13 protein.
          Length = 148

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = -1

Query: 155 KNE*FFTKINFDCILTFTSVYRICLFKYVSL*VKYLYPTINTIFITVLSP 6
           +NE  ++ INF C   F S +   +F +    +K  +P     FI  +SP
Sbjct: 32  ENENCYSTINFSCFPFFISRFSEIVFFFPLSDLKVSFPEDVHNFINPVSP 81


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,067,702
Number of Sequences: 27780
Number of extensions: 82385
Number of successful extensions: 197
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 12,740,198
effective HSP length: 65
effective length of database: 10,934,498
effective search space used: 229624458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)