Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_H19
         (532 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    23   1.9  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    23   1.9  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    23   1.9  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    23   1.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   4.5  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    21   7.9  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    21   7.9  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   7.9  

>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 225 EGWKEREKDRKEGTTQEE 278
           E WKER +DR E     E
Sbjct: 61  ETWKERSRDRTERERSRE 78


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 225 EGWKEREKDRKEGTTQEE 278
           E WKER +DR E     E
Sbjct: 61  ETWKERSRDRTERERSRE 78


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 225 EGWKEREKDRKEGTTQEE 278
           E WKER +DR E     E
Sbjct: 61  ETWKERSRDRTERERSRE 78


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 225 EGWKEREKDRKEGTTQEE 278
           E WKER +DR E     E
Sbjct: 61  ETWKERSRDRTERERSRE 78


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 11/55 (20%), Positives = 24/55 (43%)
 Frame = +1

Query: 343 PFDSMPKGSFNMDDFKRFYSNEEEAKSIPYFWEKFDPEHYSIWYCQYKYPEELAK 507
           PF  M    + + +  R   +E++  S     ++  P H  + + Q  +P+  A+
Sbjct: 773 PFKGMETQDYRIPEVMRRLMSEDKRLSKSVNGDQSQPPHQQLHHHQSTHPQAQAQ 827



 Score = 21.4 bits (43), Expect = 5.9
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = -1

Query: 73   QHMLESMQQRAVDDNICKSN 14
            Q + ESM+ +A+ D +C+++
Sbjct: 1317 QQIPESMRSKALIDQLCRNS 1336


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +3

Query: 234 KEREKDRKEGTTQEEGRACRTRY 302
           KER +DR+E     E R   + Y
Sbjct: 297 KERSRDRRERGRSREHRIIPSHY 319


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 317 MRNPRSPKTRLTRCQRGLSI 376
           MRN RSP   +   Q+G SI
Sbjct: 100 MRNDRSPSYSMQVPQQGASI 119


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 317 MRNPRSPKTRLTRCQRGLSI 376
           MRN RSP   +   Q+G SI
Sbjct: 548 MRNDRSPSYSMQVPQQGASI 567


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,842
Number of Sequences: 438
Number of extensions: 2477
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14968302
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)