Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_H18
         (472 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    26   3.3  
SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces ...    25   4.4  
SPBC21H7.02 |taf10||transcription factor TFIID complex subunit T...    25   4.4  

>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1217

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 223 PNFAGRSNGVGAAAFRSGKSKSPIIADDFLAVVLSD 330
           PN  G+SNG+  A + S + K+  + D  L   ++D
Sbjct: 18  PNSTGKSNGIKKAVYTSTRKKTVGVDDLTLLSKITD 53


>SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 15/40 (37%), Positives = 17/40 (42%)
 Frame = +1

Query: 145 GYRQPDVSFGESLLDIRHRGVPSFPFPNFAGRSNGVGAAA 264
           GY   D  FGE   D  H  VPS+  PN      G  A +
Sbjct: 498 GYVTSD-DFGEDGDDTVHTSVPSYATPNILQAQAGFNATS 536


>SPBC21H7.02 |taf10||transcription factor TFIID complex subunit
           Taf10 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 211 SFPFPNF-AGRSNGVGAAAFRSGKSKSPIIADDFLAVV 321
           +F   NF AG ++G+G++  R  + K+ +  DD  A +
Sbjct: 164 TFGAQNFGAGGASGIGSSGRRGDRGKTVLTVDDLSAAL 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,556,393
Number of Sequences: 5004
Number of extensions: 25985
Number of successful extensions: 59
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)