Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_H18
         (472 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0818 - 21524539-21524664,21524911-21524961,21525800-215261...    28   3.3  
07_03_1626 + 28223967-28225294,28225506-28225779,28225939-282262...    27   7.6  
03_05_0231 - 22170343-22172004,22172225-22172449                       27   7.6  
01_03_0029 - 11784446-11784756,11785295-11786576                       27   7.6  

>08_02_0818 -
           21524539-21524664,21524911-21524961,21525800-21526170,
           21526497-21526852,21527926-21527996
          Length = 324

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 9   SCRVIRPRWAIGVRCSVTSSSLRRWIWQ 92
           S R  + RW  GV   VT  +LRR +W+
Sbjct: 140 SPRETKQRWGWGVSVQVTMDALRRELWE 167


>07_03_1626 +
           28223967-28225294,28225506-28225779,28225939-28226230,
           28226492-28226651,28226809-28226917,28227004-28227099
          Length = 752

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +1

Query: 181 LLDIRHRGVPSFPFPNFAGRSNGVGAAAFRSGKSKSPIIAD 303
           LL++   G  +   P   G   G G AAF+SG +K+P IA+
Sbjct: 398 LLELMRPGQRALLLP---GGRGGRGNAAFKSGTNKAPRIAE 435


>03_05_0231 - 22170343-22172004,22172225-22172449
          Length = 628

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = +2

Query: 11  LPRHSA*VGNRCPV-QRHKQQPSEVDLAIISVARALHRLSASTLSMVTDSLMCHLAKAFL 187
           LPR     G+  P+  RH     +  LA I   R L+ LS +    + DSL+ H    FL
Sbjct: 8   LPRRDN--GDGDPILSRHSSSSDDPILARIDEERGLNLLSGNLYGAILDSLVPHAHGPFL 65


>01_03_0029 - 11784446-11784756,11785295-11786576
          Length = 530

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 9/68 (13%)
 Frame = +1

Query: 148 YRQPDVSFGESLLDIRH---------RGVPSFPFPNFAGRSNGVGAAAFRSGKSKSPIIA 300
           +R+PD+S  ++L  +R          RG P  P P  A   +   AAA+R+ +   P   
Sbjct: 203 HRRPDLSRDDALRHLRADLRAAVASARGSPPPPLP--AESDSEAEAAAYRAAQHPKPAAL 260

Query: 301 DDFLAVVL 324
             FLA VL
Sbjct: 261 AHFLATVL 268


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,938,964
Number of Sequences: 37544
Number of extensions: 170194
Number of successful extensions: 359
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 359
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)