Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_H16
         (564 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.12c |||rRNA processing protein|Schizosaccharomyces pombe|...    27   2.5  
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    25   5.8  

>SPCC18.12c |||rRNA processing protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 260

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 267 RSGPPTPSPLGLVIRQSPDHTGAMPGL 187
           R GP  P+PL +  R S +HT   P L
Sbjct: 215 RKGPKGPNPLSIKKRSSKNHTTDEPTL 241


>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 471

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 319 HACLNRPPSQTTFPVQWKVRAPHP 248
           H  L+R P +   P+ W V   HP
Sbjct: 240 HKKLSRKPIKIGIPIDWNVSETHP 263


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,334,230
Number of Sequences: 5004
Number of extensions: 50254
Number of successful extensions: 114
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)