Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_H16
(564 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0461 - 21026440-21026617,21027918-21028127,21028920-21029326 32 0.27
04_04_1660 - 35140641-35141894 30 1.1
12_01_0060 - 499291-501228 29 1.9
11_01_0172 - 1383568-1384440,1385336-1385401,1385470-1385505,138... 29 3.4
03_05_0019 + 19862171-19863049 29 3.4
12_02_0118 - 13869237-13869307,13869375-13869465,13870321-138704... 28 4.5
03_01_0228 + 1802038-1803265,1804207-1804245,1804638-1804783,180... 28 4.5
12_01_0173 - 1292164-1293036,1294063-1294098,1294195-1294334,129... 28 5.9
10_08_0600 - 19098312-19099439 28 5.9
07_03_0537 - 19218461-19218982,19219482-19219868,19219993-192201... 28 5.9
04_04_0677 + 27195264-27195291,27196034-27196271,27196350-271965... 28 5.9
03_04_0151 - 17729023-17729372,17729441-17730623,17730723-177309... 28 5.9
03_04_0006 + 16257288-16259522 27 7.8
02_04_0577 - 24011542-24011906,24012285-24012385,24013029-240132... 27 7.8
01_06_1387 + 36944138-36944147,36944272-36944333,36944825-369448... 27 7.8
>06_03_0461 - 21026440-21026617,21027918-21028127,21028920-21029326
Length = 264
Score = 32.3 bits (70), Expect = 0.27
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Frame = +3
Query: 156 ASRGLSADGGSVRASHRCDLDSALL---PNQGGKGWGALTFHCTGKVVW 293
A+R L++ GG R + D+D LL P GWG+L F+ T W
Sbjct: 100 AARALASGGGGARPAWVFDVDETLLTNAPYYAVNGWGSLEFNETSFDEW 148
>04_04_1660 - 35140641-35141894
Length = 417
Score = 30.3 bits (65), Expect = 1.1
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = -1
Query: 345 SIPSHAVEVTPA*TGHPPRQLSQCNGRSGPPT-PSPLGLVIRQSPDHTGAMPGLSRRLRL 169
S+PS + + A T HPP+ L+ CN +G + PLG + H + G + L
Sbjct: 133 SLPSSSSSSSTASTAHPPKSLAVCNPFAGTYSFLPPLGSAWAR---HGTVLAG-PGGVVL 188
Query: 168 VLARHLS*NYTPSHS 124
VL + +YTPS S
Sbjct: 189 VLTELAALSYTPSGS 203
>12_01_0060 - 499291-501228
Length = 645
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -3
Query: 313 CLNRPPSQTTFPVQWKVRAPHPFPPWFGNKAESRSHRCDARTEP 182
CL PS TFP+ K + P P G + +RS + + T P
Sbjct: 63 CLLPNPSHLTFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNP 106
>11_01_0172 -
1383568-1384440,1385336-1385401,1385470-1385505,
1385604-1385743,1386978-1387134,1387245-1387418,
1387540-1387790,1390296-1390446
Length = 615
Score = 28.7 bits (61), Expect = 3.4
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = -1
Query: 297 PPRQLSQCNGRSGPPTPSPLGLVIRQSPDHTGAMPGL 187
PP Q +Q G S PP P PL L + Q +TG M G+
Sbjct: 495 PPTQANQATG-SFPPPPPPLPL-MPQFVQNTGGMFGM 529
>03_05_0019 + 19862171-19863049
Length = 292
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = -1
Query: 369 LRVDIPFRSIPSHAVEVTPA*TGHPPRQLSQCNGRSGPPTPSP 241
+R + FR+ P+ A TP PP + R PP P P
Sbjct: 152 MRAEDLFRTKPTAAAPATPPAAKRPPEPPPKTTQRQQPPGPPP 194
>12_02_0118 -
13869237-13869307,13869375-13869465,13870321-13870440,
13870668-13870795,13871159-13871270,13871719-13871817,
13871918-13871992,13872099-13872320,13873177-13874034
Length = 591
Score = 28.3 bits (60), Expect = 4.5
Identities = 27/84 (32%), Positives = 30/84 (35%), Gaps = 2/84 (2%)
Frame = -3
Query: 370 SPCRYPVPFHPV--TRGRGHACLNRPPSQTTFPVQWKVRAPHPFPPWFGNKAESRSHRCD 197
SP R P PF P T A + P S + V RAP PF P GN S R
Sbjct: 3 SPSRPPPPFAPQNPTPAPNPAASSLPASFSNLHVS---RAPPPFAPPGGNGPVPSSIRAP 59
Query: 196 ARTEPPSALSPREAPELKLYTQPF 125
P + P P PF
Sbjct: 60 QAPPPGARPFPGSPPPPSQPPPPF 83
>03_01_0228 +
1802038-1803265,1804207-1804245,1804638-1804783,
1804891-1804958,1805045-1805147,1805287-1805400
Length = 565
Score = 28.3 bits (60), Expect = 4.5
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -3
Query: 406 RRIQTTIIDRLYSPCRYPVPFHPVTRGRGHACLNRPPSQTTFPV 275
RRI T + R + + HPV+ +GH L P+ FPV
Sbjct: 61 RRITFTELWRAVAGAASALAAHPVSLRKGHVALILSPNSVHFPV 104
>12_01_0173 -
1292164-1293036,1294063-1294098,1294195-1294334,
1295592-1295748,1295862-1296035,1296146-1296396,
1299446-1299590
Length = 591
Score = 27.9 bits (59), Expect = 5.9
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = -1
Query: 297 PPRQLSQCNGRSGPPTPSPLGLVIRQSPDHTGAMPGL 187
PP Q +Q G S PP P PL L + Q +TG M G+
Sbjct: 471 PPTQANQAAG-SFPPPPPPLPL-MPQFVQNTGGMFGM 505
>10_08_0600 - 19098312-19099439
Length = 375
Score = 27.9 bits (59), Expect = 5.9
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = -1
Query: 246 SPLGLVIRQSPDHTGAMPGLSRRLRLVLAR 157
+PL +R SP A+PGL+RRL L L R
Sbjct: 43 APLVDALRASPAEPLALPGLARRLPLRLHR 72
>07_03_0537 - 19218461-19218982,19219482-19219868,19219993-19220154,
19220464-19221117,19221233-19221277,19223300-19223845,
19223930-19224307,19224642-19225313,19225373-19225456
Length = 1149
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 153 GASRGLSADGGSVRASHRCDLDSALLPNQGGKG 251
GA++G GG+VR S R + + GGKG
Sbjct: 1108 GAAKGSGGGGGAVRRSSRSCVQAKRFRRVGGKG 1140
>04_04_0677 +
27195264-27195291,27196034-27196271,27196350-27196500,
27196578-27196972,27197270-27197339,27197414-27197696,
27197972-27198297,27198409-27199368
Length = 816
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -1
Query: 246 SPLGLVIRQSPDHTGAMPGLSRRLRLVL 163
+P G+ +R SPD PG + LR+VL
Sbjct: 751 APDGVAVRVSPDTFAVAPGATATLRIVL 778
>03_04_0151 -
17729023-17729372,17729441-17730623,17730723-17730953,
17730975-17731036,17732085-17732157,17737044-17737834,
17737932-17738004
Length = 920
Score = 27.9 bits (59), Expect = 5.9
Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 4/26 (15%)
Frame = -1
Query: 267 RSGPPTPSPL----GLVIRQSPDHTG 202
R GPPTPSPL L++R PD G
Sbjct: 215 RHGPPTPSPLLVLDCLILRPVPDFDG 240
>03_04_0006 + 16257288-16259522
Length = 744
Score = 27.5 bits (58), Expect = 7.8
Identities = 18/54 (33%), Positives = 23/54 (42%)
Frame = +3
Query: 177 DGGSVRASHRCDLDSALLPNQGGKGWGALTFHCTGKVVWEGGLFRQA*PLPRVT 338
DGGS HRC + N GG A FH + GLFR + P ++
Sbjct: 353 DGGSRIGYHRCKSEQLHQNNGGGGSSVANNFHKLQSPHKDVGLFRVSGVCPTIS 406
>02_04_0577 -
24011542-24011906,24012285-24012385,24013029-24013287,
24014176-24014264,24015331-24015419
Length = 300
Score = 27.5 bits (58), Expect = 7.8
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Frame = +3
Query: 120 GKNGWVYSFS--SGASRGLSADGGSVRASHRC 209
GKNGW S +G+ RG GGS + C
Sbjct: 60 GKNGWRVELSTKAGSGRGRDRSGGSDMKCYEC 91
>01_06_1387 +
36944138-36944147,36944272-36944333,36944825-36944865,
36945217-36945286,36946146-36946826,36946907-36946981,
36947057-36947163,36947264-36947370,36947463-36947522,
36947616-36947689,36947788-36947838,36948009-36948058,
36948079-36948123,36948161-36948221,36948284-36948349,
36948700-36948789,36948875-36948940,36949039-36949134,
36949219-36949308,36949371-36949388
Length = 639
Score = 27.5 bits (58), Expect = 7.8
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -1
Query: 339 PSHAVEVTPA*TGHPPRQLSQCNGRSGPPTPSPL 238
PS + VT + H P Q+ QC R P +P L
Sbjct: 90 PSPSRRVTRRVSVHIPPQIPQCRNRKSPTSPRSL 123
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,942,986
Number of Sequences: 37544
Number of extensions: 405675
Number of successful extensions: 1240
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1240
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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