Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_H16
         (564 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067219-3|AAC17027.1|   74|Caenorhabditis elegans Hypothetical ...    31   0.57 
AC098856-6|AAR12981.1|   93|Caenorhabditis elegans Hypothetical ...    29   2.3  
U80025-1|AAD32271.1| 1064|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AC006729-9|AAF60470.1|  670|Caenorhabditis elegans Hypothetical ...    28   4.0  
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z92838-2|CAB07408.1|  211|Caenorhabditis elegans Hypothetical pr...    27   7.0  
U23139-8|AAK31491.2| 1051|Caenorhabditis elegans Biotin protein ...    27   9.3  
L15313-8|AAA28196.1|  469|Caenorhabditis elegans Hypothetical pr...    27   9.3  

>AF067219-3|AAC17027.1|   74|Caenorhabditis elegans Hypothetical
           protein R12E2.6 protein.
          Length = 74

 Score = 31.1 bits (67), Expect = 0.57
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = -1

Query: 315 PA*TGHPPRQLSQCNGRSGPPTP--SPLGLVIRQSPDHTGAMPG 190
           P   G PP   + C G  GPP P   P+G  +   P +  A+PG
Sbjct: 30  PQCCGPPPACGNPCGGGFGPPPPPFGPVGYALPPPPPNGYALPG 73


>AC098856-6|AAR12981.1|   93|Caenorhabditis elegans Hypothetical
           protein Y37F4.7 protein.
          Length = 93

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -3

Query: 259 APHPFPPWFGNKAESRSHRCDARTEPPSALSPREAPELKLYTQ 131
           AP P+P  +  +   R    D    P S LSP  AP ++  T+
Sbjct: 3   APRPYPHQWNLRQYRRWIPADVHVNPISQLSPESAPRMRSPTE 45


>U80025-1|AAD32271.1| 1064|Caenorhabditis elegans Hypothetical
           protein F02C9.3 protein.
          Length = 1064

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/52 (26%), Positives = 21/52 (40%)
 Frame = -3

Query: 334 TRGRGHACLNRPPSQTTFPVQWKVRAPHPFPPWFGNKAESRSHRCDARTEPP 179
           T  +  +C  R   Q      WK++ P PF     N++E     C+   E P
Sbjct: 219 TSDKSSSCFIRT-DQLDGETDWKLKIPIPFTQHLANESEIMELNCEVYAEKP 269


>AC006729-9|AAF60470.1|  670|Caenorhabditis elegans Hypothetical
           protein Y24D9A.1a protein.
          Length = 670

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
 Frame = -3

Query: 358 YPVPFHPVTRGRGH--ACLNRPPSQTTFPVQWKVRAPH-PFPPWFGNKAESRSHRCDART 188
           Y  P  P  + R H  A    PP Q   P     +    P PP    + ES S + +  +
Sbjct: 417 YTAPPEPANKRRAHNLAPPPPPPVQVVTPQTTSSQTETGPLPPKRTKRPESSSPQLERSS 476

Query: 187 EPPSALSP 164
           +P S L+P
Sbjct: 477 QPASKLNP 484


>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
           protein F15B9.4 protein.
          Length = 1140

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = -1

Query: 342 IPSHAVEVTPA*TGHPPRQLSQCNGRSGPPTPSPLGLV 229
           +P  A   T A T  PP  +   NG   PP P PL L+
Sbjct: 525 MPGMAPLSTGAPTPPPPPPVGMANGGPPPPPPLPLDLL 562


>Z92838-2|CAB07408.1|  211|Caenorhabditis elegans Hypothetical
           protein T03D8.3 protein.
          Length = 211

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -1

Query: 348 RSIPSHAVEVTPA*TGHPPRQLSQCNGR 265
           RSIPS A +V P   G P R + + NG+
Sbjct: 181 RSIPSSAHKVNPYLQGEPLRSMQKKNGK 208


>U23139-8|AAK31491.2| 1051|Caenorhabditis elegans Biotin protein
           ligase protein 1,isoform a protein.
          Length = 1051

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 12/46 (26%), Positives = 20/46 (43%)
 Frame = -3

Query: 262 RAPHPFPPWFGNKAESRSHRCDARTEPPSALSPREAPELKLYTQPF 125
           R P P+PP    +  S +  C + + P  +  PR    + + T  F
Sbjct: 354 RTPTPYPPADSERPISEASSCHSESPPRDSKPPRSPSRVTIPTIDF 399


>L15313-8|AAA28196.1|  469|Caenorhabditis elegans Hypothetical
           protein ZK353.8 protein.
          Length = 469

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 359 ISRSVPSRHTR*RSRLPEQATLPDNFPS 276
           + ++VPS   R + RLP+ +T  + FPS
Sbjct: 274 VGKAVPSDRCRLQVRLPDGSTFVEEFPS 301


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,073,053
Number of Sequences: 27780
Number of extensions: 302978
Number of successful extensions: 707
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)