Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_H14
         (320 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC977.06 |||S. pombe specific DUF999 family protein 3|Schizosa...    24   5.0  
SPBPB2B2.07c |||S. pombe specific DUF999 protein family 7|Schizo...    24   5.0  
SPBC1348.07 |||S. pombe specific DUF999 protein family 6|Schizos...    24   6.6  
SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|ch...    24   6.6  
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    23   8.7  

>SPAC977.06 |||S. pombe specific DUF999 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 189

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 200 LFLNIIQKQKTESM*YTEKVLFIMN 274
           LF NII+ QK +    T+K+ F +N
Sbjct: 27  LFTNIIKPQKDKINIKTDKIKFFLN 51


>SPBPB2B2.07c |||S. pombe specific DUF999 protein family
           7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 165

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 200 LFLNIIQKQKTESM*YTEKVLFIMN 274
           LF NII+ QK +    T+K+ F +N
Sbjct: 47  LFTNIIKPQKDKINIKTDKIKFFLN 71


>SPBC1348.07 |||S. pombe specific DUF999 protein family
           6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 200 LFLNIIQKQKTESM*YTEKVLFIMN 274
           LF NI++ QK +    T+K+ F +N
Sbjct: 27  LFTNIVKPQKDKINIKTDKIKFFLN 51


>SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 185

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -3

Query: 273 FIINNTFSVYYILSVFCFCMIFKNNLLFIKVHRKLFP 163
           FII    +VY I  + C C++  NN++ I+   +  P
Sbjct: 125 FIIVAASNVYSIFQL-CGCLLMFNNIISIRPSERTEP 160


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1328

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 211 YHTKTKNRKYVVHGKGIIYNESLNTSL 291
           +HT     + V HG  +  NES N S+
Sbjct: 725 FHTLKHKAELVYHGINVFGNESRNPSV 751


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,130,646
Number of Sequences: 5004
Number of extensions: 17229
Number of successful extensions: 36
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)