Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_H14
         (320 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF014940-9|AAY43993.1|  131|Caenorhabditis elegans Hypothetical ...    27   3.0  
Z79597-1|CAB01861.1|  271|Caenorhabditis elegans Hypothetical pr...    27   4.0  
U39854-4|AAA81079.2|  195|Caenorhabditis elegans Hog only (hedge...    27   4.0  
U23521-9|AAC46809.2|  499|Caenorhabditis elegans Hypothetical pr...    26   5.3  
AL110478-4|CAB54346.1|  546|Caenorhabditis elegans Hypothetical ...    26   7.0  

>AF014940-9|AAY43993.1|  131|Caenorhabditis elegans Hypothetical
           protein W02D7.12 protein.
          Length = 131

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 238 YVVHGKGIIYNESLNTSLCLVSLWMMK 318
           YV+ G+   Y+ +LN   C+ S WM++
Sbjct: 85  YVIEGQETPYSSNLNDVTCVGSKWMVE 111


>Z79597-1|CAB01861.1|  271|Caenorhabditis elegans Hypothetical
           protein C33A11.2 protein.
          Length = 271

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -3

Query: 249 VYYILSVFCFCMIFKNNLLFIKVHRKLFP 163
           ++ I SV CFC  F   +   K+  K +P
Sbjct: 165 IFTIFSVICFCCSFGFGIAASKIFHKTYP 193


>U39854-4|AAA81079.2|  195|Caenorhabditis elegans Hog only (hedgehog
           hog domain alone)protein 1 protein.
          Length = 195

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 235 KYVVHGKGIIYNESLNTSLCLVSLWMMK 318
           KY+  G+ ++Y E L    CLV L+  K
Sbjct: 79  KYLPKGRNVVYAEELKVGDCLVLLYKGK 106


>U23521-9|AAC46809.2|  499|Caenorhabditis elegans Hypothetical
           protein F41C3.2 protein.
          Length = 499

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -3

Query: 264 NNTFSVYYILSVFCFCMIFKNNLLFI 187
           N+T + +  L +  FC++F +NL+FI
Sbjct: 436 NDTHNEWTRLFLIIFCIVFVSNLIFI 461


>AL110478-4|CAB54346.1|  546|Caenorhabditis elegans Hypothetical
           protein Y26D4A.10 protein.
          Length = 546

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 267 INNTFSVYYILSVFCFCMIFKNNLLFIKVHR 175
           I  TFS     S  C+C++   N++ IK +R
Sbjct: 380 IKATFSKSIASSTKCYCLVMSENIVEIKDNR 410


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,100,211
Number of Sequences: 27780
Number of extensions: 93124
Number of successful extensions: 179
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 376873630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)