Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_H13
(647 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0548 - 4033077-4033349,4034007-4034261,4034362-4034533,403... 29 3.2
09_02_0196 - 5678744-5679222,5679304-5679937 28 5.6
01_05_0660 - 24071523-24071780,24071873-24072127,24072209-240723... 28 5.6
11_04_0299 + 16127671-16128180,16128217-16128516 28 7.4
10_01_0307 + 3382432-3382608,3382690-3382863,3383600-3383695,338... 28 7.4
10_01_0013 + 154098-154101,154513-154673,154773-154847,155071-15... 27 9.7
02_02_0483 - 10830978-10831284,10831727-10832232,10832770-10832856 27 9.7
>01_01_0548 - 4033077-4033349,4034007-4034261,4034362-4034533,
4034616-4034839,4035168-4035332,4035591-4035881,
4035971-4036303,4036391-4036485,4036570-4036689,
4036778-4036934,4037176-4037279,4037383-4037543,
4037636-4037952,4038655-4038936,4039020-4039321,
4039453-4039543,4040227-4040280,4040367-4040684,
4041008-4041092,4041178-4041266,4041474-4041594,
4042136-4042431
Length = 1434
Score = 29.1 bits (62), Expect = 3.2
Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
Frame = +1
Query: 208 SVISIKFTFKL--SCLFFNYAKSSIEMQFFFLQNVMYVHFMQFFLKCFCIEGHNLLILTS 381
S+++++F + L S ++ S ++ ++ + Y+ FM F L F G +T
Sbjct: 1258 SLVTVEFPYILVQSLIYGTIFYSLGSFEWTAVKFLWYLFFMYFTLLYFTFYGMMTTAITP 1317
Query: 382 YNTYCDSP*DVSYYLWLLMFNFVAKHRRVP 471
+T Y LW L F+ +R+P
Sbjct: 1318 NHTVAPIIAAPFYTLWNLFCGFMIPRKRIP 1347
>09_02_0196 - 5678744-5679222,5679304-5679937
Length = 370
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +3
Query: 276 RDAIFFFTKCYVCTFHAILSEV 341
RD FF T+ Y FHA+L EV
Sbjct: 214 RDRYFFLTRPYPPAFHALLGEV 235
>01_05_0660 - 24071523-24071780,24071873-24072127,24072209-24072380,
24072458-24072685,24072785-24072918,24073005-24073088,
24073231-24073521,24073599-24073931,24074016-24074266,
24074354-24074620,24074707-24074867,24074978-24075294,
24075386-24075667,24075753-24076054,24076147-24076237,
24076326-24076379,24076497-24076573,24076700-24076859,
24077129-24077213,24077421-24077630,24077736-24078097
Length = 1457
Score = 28.3 bits (60), Expect = 5.6
Identities = 22/88 (25%), Positives = 34/88 (38%)
Frame = +1
Query: 211 VISIKFTFKLSCLFFNYAKSSIEMQFFFLQNVMYVHFMQFFLKCFCIEGHNLLILTSYNT 390
VI I +T + ++ + I ++ + Y+ FM F L F G + LT
Sbjct: 1289 VIEIPYTLVQATVYGIIVYAMIGFEWTAAKFFWYLFFMVFTLLYFTFYGMMAVGLTPNYH 1348
Query: 391 YCDSP*DVSYYLWLLMFNFVAKHRRVPV 474
Y +W L FV RVP+
Sbjct: 1349 IASIVSSAFYAIWNLFSGFVIPRPRVPI 1376
>11_04_0299 + 16127671-16128180,16128217-16128516
Length = 269
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +3
Query: 276 RDAIFFFTKCYVCTFHAILSEV 341
RD FF T Y FHA+L EV
Sbjct: 125 RDRYFFLTPSYPPAFHALLGEV 146
>10_01_0307 +
3382432-3382608,3382690-3382863,3383600-3383695,
3384640-3384709,3385878-3386002,3387128-3387268,
3387362-3387519,3387644-3387803,3390136-3390213,
3390326-3390385,3390473-3390528,3391886-3392090,
3394107-3394192,3394296-3394406,3394536-3394607,
3395453-3395538,3395730-3395878,3396107-3396250,
3396335-3396442,3396997-3397027,3397609-3397713,
3398283-3398407,3398807-3398950,3399073-3399177,
3400748-3400799,3401549-3401696,3401936-3402130,
3402404-3402647,3403152-3403259,3403887-3404034,
3405467-3405525,3405876-3405945,3407008-3407333,
3407666-3409204,3410526-3410733,3410870-3410906,
3411024-3411072,3411143-3411271
Length = 2025
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +2
Query: 185 AELKGAWIVL*V*NLHLSYLVCFLIMRNPVSRCNFFFYKMLC 310
AEL +W+ + ++L + + FL + +SRCN + MLC
Sbjct: 216 AELTISWLEETLIEINLIFDILFLFFYDNLSRCNGGLWIMLC 257
>10_01_0013 +
154098-154101,154513-154673,154773-154847,155071-155571,
155873-156214,158107-158234,158296-158342,160117-160196,
160569-160654,161409-161556,161947-162082,162160-162488,
162953-163169,164547-164572
Length = 759
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +1
Query: 268 SSIEMQFFFLQNVMYVHFMQFFLKCFCIEGHNLLILTSYNT-YCD 399
SSI +F F + ++ + FCI+ HN L Y T YCD
Sbjct: 372 SSILKEFGFCPKEKCIDNIKLYCS-FCIQNHNFLSPYMYGTSYCD 415
>02_02_0483 - 10830978-10831284,10831727-10832232,10832770-10832856
Length = 299
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 276 RDAIFFFTKCYVCTFHAILSE 338
RD FF T Y TFHA+L E
Sbjct: 62 RDRYFFLTPPYPPTFHALLGE 82
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,975,329
Number of Sequences: 37544
Number of extensions: 208858
Number of successful extensions: 420
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 420
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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