Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_H12
         (297 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    25   2.4  
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    24   4.2  
SPBC1347.14c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       24   4.2  
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation...    23   9.6  

>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -1

Query: 297 EQYHDH*HLEVYDSFEINAF 238
           E Y ++ HLE+ DS++ N+F
Sbjct: 706 ESYKENYHLELVDSYDDNSF 725


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
           Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 24.2 bits (50), Expect = 4.2
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 134 ALLVNEVLLNFTLHIYIFPIYFI 66
           A+L+N +LL    H Y +P +F+
Sbjct: 159 AVLLNLLLLPPIFHFYSYPFFFV 181


>SPBC1347.14c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 24.2 bits (50), Expect = 4.2
 Identities = 7/27 (25%), Positives = 17/27 (62%)
 Frame = -2

Query: 131 LLVNEVLLNFTLHIYIFPIYFILVIVT 51
           +L++  + +     ++FP Y+ L+I+T
Sbjct: 1   MLLSNKIKHSIFQFFVFPFYYFLLIIT 27


>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
           specificity factor complex subunit
           Pta1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 278 NTWKFMTVLK*MLSRDF*RLNVNLLF*CI 192
           +TW  +T LK  +  DF + N  LL  CI
Sbjct: 116 STWDTLTKLKNEIINDFDKGNKPLLISCI 144


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,056,234
Number of Sequences: 5004
Number of extensions: 16503
Number of successful extensions: 34
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 73880280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)