Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_H12
         (297 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0290 - 22791338-22791925,22792012-22793196,22793835-227939...    29   0.65 
02_04_0080 - 19529575-19529643,19529756-19529938,19530061-195302...    27   2.6  
10_02_0096 - 5248369-5248479,5248562-5248604,5249093-5249178,525...    26   4.6  

>03_05_0290 -
           22791338-22791925,22792012-22793196,22793835-22793904,
           22795918-22795979
          Length = 634

 Score = 29.1 bits (62), Expect = 0.65
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +3

Query: 135 QRNRMTLKWCYVIKTLN-VTNTLK*KIYI*PLKVSRKHLFQNCHKLPSVNGHD 290
           Q  +  L W   +K +N   +++  K  I P +V   + + N  KLPS NGHD
Sbjct: 145 QSTKSLLPWSENLKVINHCIDSIASKALIDPSEVEWSYTY-NRKKLPSENGHD 196


>02_04_0080 -
           19529575-19529643,19529756-19529938,19530061-19530210,
           19530297-19530379,19530497-19530599,19530709-19530918,
           19531023-19531183,19531275-19531351,19531483-19531610,
           19531695-19531935,19532047-19532180,19532261-19532435,
           19532587-19532656,19532746-19532803,19532887-19532994,
           19533088-19533283,19533381-19533727,19534008-19534034,
           19534334-19534336
          Length = 840

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +2

Query: 113 GLRLLKVPEKSNDFKMVLRYQNS*CYKYIKIKDL 214
           G  + +V E S D+KM+L+Y     Y+ +K+ D+
Sbjct: 613 GCSINRVVEDSEDYKMILKYLEK-TYEPVKVGDV 645


>10_02_0096 -
           5248369-5248479,5248562-5248604,5249093-5249178,
           5250089-5250153,5252539-5252747,5253077-5253188,
           5253271-5253322,5254593-5254685,5254997-5255146,
           5255223-5255327,5255858-5255891,5256145-5256281,
           5257691-5257819,5257899-5257977,5258081-5258156,
           5258981-5259070,5259181-5259259,5259397-5259431,
           5260722-5260811,5260913-5261027
          Length = 629

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 160 GATLSKLLMLQIH*NKRFTFSL*KSLESIYFKTVINFQVLM 282
           G T ++  ++Q H + R  FSL      +Y K   NFQ+++
Sbjct: 301 GVTKAQKEIVQQHISHRLRFSLRAYTSILYLKKFENFQIIL 341


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,732,407
Number of Sequences: 37544
Number of extensions: 78035
Number of successful extensions: 120
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 327448548
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)