Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_H12
         (297 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72502-9|CAE17688.1|  300|Caenorhabditis elegans Hypothetical pr...    27   1.8  
Z81088-11|CAB03132.1|  339|Caenorhabditis elegans Hypothetical p...    27   3.2  
Z68009-1|CAA92003.1| 1095|Caenorhabditis elegans Hypothetical pr...    26   5.6  
AF125965-3|AAD14757.1|  266|Caenorhabditis elegans Hypothetical ...    25   9.7  

>Z72502-9|CAE17688.1|  300|Caenorhabditis elegans Hypothetical
           protein C08B6.12 protein.
          Length = 300

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/43 (32%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
 Frame = -2

Query: 131 LLVNEVLLNFTLHIYI-FPIYFIL--VIVTNGILKYIPISSQL 12
           ++V+E+ +NFT +I + FP +F       +  I+K++ I SQ+
Sbjct: 42  MIVSEIFMNFTQNILVEFPYFFTQDPAFYSFEIVKFVEIFSQM 84


>Z81088-11|CAB03132.1|  339|Caenorhabditis elegans Hypothetical
           protein F53F1.11 protein.
          Length = 339

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -2

Query: 128 LVNEVLLNFTLHIYI--FPIYFILVIVTNGILKYIPISSQLL 9
           L N V +    HI +  FP+Y  + ++   I+KY+   SQ++
Sbjct: 181 LTNFVAVYAVAHICLPFFPVYITIFVLRQKIMKYLGGQSQMM 222


>Z68009-1|CAA92003.1| 1095|Caenorhabditis elegans Hypothetical protein
            R09A8.1 protein.
          Length = 1095

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 222  PLKVSRKHLFQNCHKLPSVNGHDI 293
            PL  SRKH+F  C+K+  +   +I
Sbjct: 1012 PLDTSRKHMFLFCNKVCVITDEEI 1035


>AF125965-3|AAD14757.1|  266|Caenorhabditis elegans Hypothetical
           protein H43I07.1 protein.
          Length = 266

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 33  VFQYSIGDYY*YKVYRKNINMESKVKEDFVY*KCQRNR 146
           +F YS+G +  Y  Y K    ES   ED+   K Q+ R
Sbjct: 78  LFSYSVGVFAGYYFYTKMTTPESLKIEDYEEFKQQQER 115


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,634,070
Number of Sequences: 27780
Number of extensions: 86918
Number of successful extensions: 180
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 302276744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)