Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_H11
(562 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC24C6.05 |sec28||coatomer epsilon subunit |Schizosaccharomyce... 37 0.002
SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyc... 28 0.82
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni... 28 1.1
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 27 1.9
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1... 27 1.9
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth... 27 2.5
SPAC56F8.07 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 26 3.3
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch... 26 3.3
SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos... 26 4.4
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 5.8
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 7.6
SPAC1296.02 |cox4||cytochrome c oxidase subunit IV|Schizosacchar... 25 7.6
SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr 1... 25 7.6
>SPBC24C6.05 |sec28||coatomer epsilon subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 288
Score = 37.1 bits (82), Expect = 0.002
Identities = 40/178 (22%), Positives = 74/178 (41%)
Frame = +3
Query: 9 DELFDVRNAFYVGNYQQAINEAQRINPSSPLVALQRDVFLYRSYIAQGNHRIVLQELKTA 188
+EL+ VR FY GNY + E + S + L ++++ R+ +A G +Q + T
Sbjct: 10 NELYFVRQYFYSGNYTKLF-EIDTTSMSEKGLELT-EIYMARAKLALGESLESIQSILTQ 67
Query: 189 DPILQPLKSLVDYLSPGANKPAIVADIDARVAKGTELSNEVFHVVAATIYYYEDNYEAAL 368
P + + L+ N I+ D + +F + + ++D +
Sbjct: 68 KT---PGSAAILALAGEGNMELII-DQHGNSDSVVQTLGAIFQIKNGS---FDDAMDLLK 120
Query: 369 KIFHDIELVELRAYSIQCLLAMNRPDLARXXXXXXXXXXDDGTLTQLAQAWINLSQGG 542
K ++E V L+ Y L ++ + A D+ + QLAQ+WI + GG
Sbjct: 121 KSVENLEAVALQVY---IHLREHKIEAAEQTLKQALDWADEEIVLQLAQSWIKIVSGG 175
>SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 581
Score = 28.3 bits (60), Expect = 0.82
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -2
Query: 213 ISEVEVSGQRSSTLARQYGGYPERYTNGRGKHLVEELP 100
+ E+ + S L + YPER+TN + L+E LP
Sbjct: 332 VKELSIDAFGSHVLQKSLEIYPERFTNNLIEELIECLP 369
>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 737
Score = 27.9 bits (59), Expect = 1.1
Identities = 12/30 (40%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = -3
Query: 368 QSCFIIIFIVINSGSNYMK-YLIR*LCTFC 282
++ F ++ I+ + SNY++ YL+R LCT C
Sbjct: 596 RAVFELLEIIQMASSNYLRLYLLRGLCTLC 625
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 27.1 bits (57), Expect = 1.9
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +1
Query: 394 WS*EHTLYSACWP*TVRIWRGKN*NCYRNLR 486
W ++ +YS+ + T+RIW K+ C L+
Sbjct: 277 WGGQNWIYSSSYDKTIRIWDAKDGKCLHILK 307
>SPBC947.11c |elg1||DNA replication factor C complex subunit
Elg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 920
Score = 27.1 bits (57), Expect = 1.9
Identities = 15/67 (22%), Positives = 33/67 (49%)
Frame = -3
Query: 203 LKYRVSGLQLLQDNTVVTLSDIRTVEENISLKSYQGR*RINALCLVNSLLVISNIKCISN 24
L+ R + QDN V + N + ++ + + ++ C +N+L S++K IS+
Sbjct: 725 LECRDNCANAFQDNLVGFPTISNPFHANAPPEPHELKLQYHSFCFINNLFSKSSLKAISS 784
Query: 23 IEKFIPR 3
+ +P+
Sbjct: 785 NDSIVPK 791
>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1323
Score = 26.6 bits (56), Expect = 2.5
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +3
Query: 210 KSLVDYLSPGANKPAIVADIDARVAKGTELSNEVFHVVAATIYYYEDNY 356
KS+ G++ P +VA + R +E E F + YY +NY
Sbjct: 1202 KSIFTESMAGSSLPVVVAHGEGRAVFDSESDYEQFKKEGLDLIYYVNNY 1250
>SPAC56F8.07 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 183
Score = 26.2 bits (55), Expect = 3.3
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +3
Query: 330 TIYYYEDNYEAALKIFHDIELVELRAYSIQCLLAMNR 440
T+YYY A +F D+ + E S+ CL + R
Sbjct: 26 TLYYYYFVSHLAAALFVDLPITEWLGGSLSCLSGLRR 62
>SPBC215.08c |arg4||carbamoyl-phosphate synthase
Arg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1160
Score = 26.2 bits (55), Expect = 3.3
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = -2
Query: 213 ISEVEVSGQRSSTLARQYGGYPERYTNGRGK--HLVEELP 100
+ EV RSS LA + GYP YT + H + ELP
Sbjct: 373 VIEVNARLSRSSALASKATGYPLAYTAAKIALGHTLPELP 412
>SPAC15A10.13 |ppk3||serine/threonine protein kinase
Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 637
Score = 25.8 bits (54), Expect = 4.4
Identities = 13/60 (21%), Positives = 25/60 (41%)
Frame = +3
Query: 207 LKSLVDYLSPGANKPAIVADIDARVAKGTELSNEVFHVVAATIYYYEDNYEAALKIFHDI 386
L + +YL KP + A + + + E V ++ Y D + A+K+F +
Sbjct: 443 LGKIAEYLDASVRKPVLAAALSRSLKDPFVPAREAALKVLLSVQNYFDTKDVAIKLFPSV 502
>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 682
Score = 25.4 bits (53), Expect = 5.8
Identities = 12/47 (25%), Positives = 22/47 (46%)
Frame = -2
Query: 561 AHPAPRARPATN*SKLELVVLKFRHPQVPVAVSVLSAPNPDGSWPTG 421
+HP P A+ A N L ++ VP+ ++ ++ N + P G
Sbjct: 244 SHPFPAAQHAVNGQPQALYPFIYQSRNVPMGSTMFASSNQSAAHPDG 290
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.0 bits (52), Expect = 7.6
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +3
Query: 108 LQRDVFLYRSYIAQGNHRIVLQELKTA 188
++R FLY ++ +H ++ QEL+ A
Sbjct: 346 IKRVAFLYHKFMIPSDHVVISQELQDA 372
>SPAC1296.02 |cox4||cytochrome c oxidase subunit
IV|Schizosaccharomyces pombe|chr 1|||Manual
Length = 164
Score = 25.0 bits (52), Expect = 7.6
Identities = 14/56 (25%), Positives = 24/56 (42%)
Frame = +3
Query: 105 ALQRDVFLYRSYIAQGNHRIVLQELKTADPILQPLKSLVDYLSPGANKPAIVADID 272
A++ V LYR +++ R +K A L K D + PG + D++
Sbjct: 15 AVRSTVSLYRGFVSASIRRNEQNVVKAAAQELANAKEPSDLIGPGGRDGEVPTDLE 70
>SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 386
Score = 25.0 bits (52), Expect = 7.6
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 396 PLIQYRGKFSKLLHNYLHSN 337
PLI + K + L H YLH+N
Sbjct: 113 PLIDFLSKHTPLEHLYLHNN 132
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,262,672
Number of Sequences: 5004
Number of extensions: 45666
Number of successful extensions: 125
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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