Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_H11
         (562 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93382-3|CAB07613.1|  292|Caenorhabditis elegans Hypothetical pr...    95   3e-20
AF003138-6|ABE73338.1| 1551|Caenorhabditis elegans Abc transport...    31   0.43 
Z54236-6|CAA90981.3|  465|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z34802-1|CAA84336.1|  531|Caenorhabditis elegans Hypothetical pr...    28   5.3  
U61954-8|AAM98018.1| 1005|Caenorhabditis elegans Hypothetical pr...    27   9.2  
U61954-7|AAK29803.1| 1140|Caenorhabditis elegans Hypothetical pr...    27   9.2  

>Z93382-3|CAB07613.1|  292|Caenorhabditis elegans Hypothetical
           protein F45G2.4 protein.
          Length = 292

 Score = 95.1 bits (226), Expect = 3e-20
 Identities = 61/186 (32%), Positives = 96/186 (51%), Gaps = 2/186 (1%)
 Frame = +3

Query: 9   DELFDVRNAFYVGNYQQAINEAQRINPSSPLVALQRDVFLYRSYIAQGNHRIVLQEL--K 182
           D+LF +RN F++G+YQ  I EA + +  +     ++DV+LYRSYIAQG   I L+E+   
Sbjct: 3   DKLFSIRNYFFLGSYQSCIGEALKFSSKNEEEKQEKDVYLYRSYIAQGQAFIPLKEIPAA 62

Query: 183 TADPILQPLKSLVDYLSPGANKPAIVADIDARVAKGTELSNEVFHVVAATIYYYEDNYEA 362
           T    L  ++   ++ +  A K  I+A++   VA    + +E+  V+AATI    D  + 
Sbjct: 63  TKSADLAAVRRYAEFRNNPAAKKKILAEVQEEVA-SRNIKSEIAAVLAATILNEADLSQD 121

Query: 363 ALKIFHDIELVELRAYSIQCLLAMNRPDLARXXXXXXXXXXDDGTLTQLAQAWINLSQGG 542
           A +     E +E RA  +  L+ MN+  LA           +D TL+QLA A +      
Sbjct: 122 AFRAVSRFEGLEARASKVFILIKMNKRKLAIGEVKKMNQIDEDATLSQLANALVTSFGAS 181

Query: 543 PGVQDA 560
             V+DA
Sbjct: 182 GKVKDA 187


>AF003138-6|ABE73338.1| 1551|Caenorhabditis elegans Abc transporter
            family protein 2 protein.
          Length = 1551

 Score = 31.5 bits (68), Expect = 0.43
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +3

Query: 315  HVVAATIYYYEDNYEAALKIFHDIELVELRAYSIQCLLAMNRPDL 449
            H V + ++     Y   + IF  + + ++RA     L  MNRPD+
Sbjct: 1075 HTVCSIVFLVLPQYNLGIAIFRGLMIYQVRAIGSNFLQQMNRPDM 1119


>Z54236-6|CAA90981.3|  465|Caenorhabditis elegans Hypothetical
           protein C27B7.6 protein.
          Length = 465

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +3

Query: 165 VLQELKTADPILQPLKSLVDYLSPGANKPAIVADIDARVAKGTELSNEV 311
           +L+ LKT   IL+PL  L++ ++P      +  DI  ++    + +NEV
Sbjct: 36  ILEVLKTIKEILEPLPCLIEIIAP----VVVFGDIHGQLGDLLQFTNEV 80


>Z34802-1|CAA84336.1|  531|Caenorhabditis elegans Hypothetical
           protein M88.1 protein.
          Length = 531

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -3

Query: 359 FIIIFIVINSGSNYMKYLIR*LCTFC 282
           FI+IFIV   G  +M+ +IR  C FC
Sbjct: 498 FIVIFIVFYIGYRFMRAVIR--CCFC 521


>U61954-8|AAM98018.1| 1005|Caenorhabditis elegans Hypothetical
           protein F41H10.3b protein.
          Length = 1005

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +3

Query: 294 ELSNEVFHVVAATIYYYEDNYEAAL 368
           E +NE+F ++A+ I Y  DN+ A++
Sbjct: 118 EDANELFRLIASCIIYSNDNWRASI 142


>U61954-7|AAK29803.1| 1140|Caenorhabditis elegans Hypothetical
           protein F41H10.3a protein.
          Length = 1140

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +3

Query: 294 ELSNEVFHVVAATIYYYEDNYEAAL 368
           E +NE+F ++A+ I Y  DN+ A++
Sbjct: 118 EDANELFRLIASCIIYSNDNWRASI 142


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,387,852
Number of Sequences: 27780
Number of extensions: 250151
Number of successful extensions: 660
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)