Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_H10
         (586 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC191.07 |cyc1||cytochrome c |Schizosaccharomyces pombe|chr 3|...   151   6e-38
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch...    27   2.7  
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ...    26   4.7  
SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|c...    26   4.7  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   6.2  
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc...    25   8.1  
SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces ...    25   8.1  
SPBC31F10.07 |||cortical component Lsb5 |Schizosaccharomyces pom...    25   8.1  
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    25   8.1  

>SPCC191.07 |cyc1||cytochrome c |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 109

 Score =  151 bits (367), Expect = 6e-38
 Identities = 65/93 (69%), Positives = 78/93 (83%)
 Frame = +3

Query: 147 FRARCAQCHTVEAGGKHKVWPNLHGFYGRKTGQAPGFSYSDANKAKGITWGDDTLFEYLE 326
           F+ RCAQCHTVE GG +KV PNLHG +GRKTGQA GFSY++AN+ KGITW ++TLF YLE
Sbjct: 15  FKTRCAQCHTVEKGGANKVGPNLHGVFGRKTGQAEGFSYTEANRDKGITWDEETLFAYLE 74

Query: 327 NPKKYIPGTKMVFAGLKKANERADLIAYLKEST 425
           NPKKYIPGTKM FAG KK  +R ++I YLK++T
Sbjct: 75  NPKKYIPGTKMAFAGFKKPADRNNVITYLKKAT 107


>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = -2

Query: 210 LAIPCVYHLPP 178
           L IPC YHLPP
Sbjct: 50  LKIPCTYHLPP 60


>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = -2

Query: 243 VQSCDHRIHVDLAIPCVYHLPPQCGIVHILHEN 145
           V++ DH ++VD   P V+ +    G++++   N
Sbjct: 502 VENLDHTVYVDSITPPVFVIDHSKGVIYVSDRN 534


>SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 585

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 145 IFVQDVHNATLWRQVVNTRYGQI 213
           +FV +V  AT++R  VNT Y  I
Sbjct: 171 VFVLNVPTATVYRPTVNTMYDHI 193


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 4924

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 198 CVYHLPPQCGIVHILHENFL 139
           CV  LP +    H+LHE FL
Sbjct: 536 CVVSLPTEDSQPHVLHEGFL 555


>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1088

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +3

Query: 315 EYLENPKKYIPGTKMVFAGLKKANERADLIAYLKE 419
           EY+EN   ++ GT+M    L   NE   L     E
Sbjct: 489 EYIENSGNFVVGTEMSIYNLPGENEEDKLFDVTNE 523


>SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 429

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 236 DWTGPWIFLLGC 271
           DW G W+ +LGC
Sbjct: 264 DWKGKWLEILGC 275


>SPBC31F10.07 |||cortical component Lsb5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 304

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1

Query: 112 CACGNAENGKKIFVQDVHNATLWRQVVNTRYGQIYMDSMVARL 240
           CA  N+E  K +  + +H   LW    +   G   M S+V+RL
Sbjct: 100 CAT-NSEYSKPVRKRAIHMIKLWHNDYSNVRGMESMSSLVSRL 141


>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +3

Query: 234 KTGQAPGFSYSDANKAKGITWGDDTLFEYLENP 332
           +TG  P FS+++ N      +G   +FE   +P
Sbjct: 97  RTGNVPTFSFTELNDTSVSGFGSQAVFENSVSP 129


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,495,431
Number of Sequences: 5004
Number of extensions: 52602
Number of successful extensions: 122
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)