Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_H10
         (586 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0348 + 20485884-20485995,20486818-20486951,20487668-20487760    139   1e-33
01_06_1583 + 38436958-38437069,38438167-38438300,38438542-384386...    79   1e-20
11_06_0513 + 24466131-24469487                                         28   4.8  
11_05_0033 + 18500092-18501372,18502419-18502826,18502948-185029...    28   4.8  
01_06_0201 - 27477392-27479728                                         28   6.3  
03_02_1012 + 13207907-13207990,13209196-13209280,13209402-132101...    27   8.3  

>05_04_0348 + 20485884-20485995,20486818-20486951,20487668-20487760
          Length = 112

 Score =  139 bits (337), Expect = 1e-33
 Identities = 59/93 (63%), Positives = 74/93 (79%)
 Frame = +3

Query: 147 FRARCAQCHTVEAGGKHKVWPNLHGFYGRKTGQAPGFSYSDANKAKGITWGDDTLFEYLE 326
           F+ +CAQCHTV+ G  HK  PNL+G +GR++G  PG+SYS ANK   + W ++TL++YL 
Sbjct: 19  FKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSTANKNMAVIWEENTLYDYLL 78

Query: 327 NPKKYIPGTKMVFAGLKKANERADLIAYLKEST 425
           NPKKYIPGTKMVF GLKK  ERADLI+YLKE+T
Sbjct: 79  NPKKYIPGTKMVFPGLKKPQERADLISYLKEAT 111


>01_06_1583 +
           38436958-38437069,38438167-38438300,38438542-38438608,
           38438900-38438937,38439302-38439391
          Length = 146

 Score = 79.4 bits (187), Expect(2) = 1e-20
 Identities = 31/65 (47%), Positives = 44/65 (67%)
 Frame = +3

Query: 147 FRARCAQCHTVEAGGKHKVWPNLHGFYGRKTGQAPGFSYSDANKAKGITWGDDTLFEYLE 326
           FR +CA CH V+    HK  PNL+G +GR++G APGFSY   +K   + W ++TL++YL 
Sbjct: 19  FRTKCAYCHAVDKAAGHKHGPNLNGLFGRQSGTAPGFSYPSGDKIVPVIWEENTLYDYLL 78

Query: 327 NPKKY 341
            PKK+
Sbjct: 79  TPKKH 83



 Score = 37.9 bits (84), Expect(2) = 1e-20
 Identities = 19/30 (63%), Positives = 22/30 (73%)
 Frame = +3

Query: 336 KYIPGTKMVFAGLKKANERADLIAYLKEST 425
           KY P  KM F GLK+  +RADLIAYLK +T
Sbjct: 117 KYTPA-KMGFNGLKQPQDRADLIAYLKNAT 145


>11_06_0513 + 24466131-24469487
          Length = 1118

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +2

Query: 98  LTIMGVP-AETLKMERKFSCKMCTMPHCGGRW*TQGMAKSTWILWSQDWTGPWIF 259
           + I+G+  A   K+ R   C+MC+         T G   S W+  SQD+   WI+
Sbjct: 217 VVIVGMAGAGKTKLTRHLLCEMCSAT-------THGFNYSLWVTVSQDFNPEWIY 264


>11_05_0033 +
           18500092-18501372,18502419-18502826,18502948-18502990,
           18503236-18503282,18504582-18505901
          Length = 1032

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -2

Query: 273 WHPSKKIQGPVQSCDHRIHVDLAIPCVYH 187
           W  +  I GP++SC H +++ L +P ++H
Sbjct: 261 WQDTDGILGPLESCVHALYL-LFVPVLFH 288


>01_06_0201 - 27477392-27479728
          Length = 778

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -3

Query: 386 IRFLQASEYHFSSRDVFLGVFKVLKQGIIAPCNTFSF 276
           + F  AS  H      FL V +  K  +I+P NTFSF
Sbjct: 16  LAFSSASPEHTLGTGSFLSVEEYEKPFLISPSNTFSF 52


>03_02_1012 +
           13207907-13207990,13209196-13209280,13209402-13210186,
           13210262-13210462,13210580-13210690,13211105-13211487,
           13211594-13211702,13211786-13211866,13212088-13212156,
           13212379-13212467,13212619-13212780,13212859-13212916,
           13213143-13213373,13213516-13213662,13213779-13214333,
           13214562-13214819,13215096-13215203,13215760-13215854,
           13215946-13216102,13216466-13216666,13217542-13217670,
           13218292-13218567
          Length = 1457

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +1

Query: 247 PLDFLTRM-PTKLKVLHGAMIPCLSTLKTPRNTSLELKWYSL 369
           P D L  M P K+ +LH + +P  S+++TP      LK Y L
Sbjct: 533 PTDDLASMEPNKIDLLHPSTMPEKSSVQTPELFKGALKEYQL 574


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,756,502
Number of Sequences: 37544
Number of extensions: 330129
Number of successful extensions: 717
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)