Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_H10
         (586 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038611-8|AAB92035.1|  111|Caenorhabditis elegans Hypothetical ...   126   9e-30
Z74046-2|CAA98555.1|  123|Caenorhabditis elegans Hypothetical pr...   121   4e-28
Z92786-4|CAB07206.1|  553|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AF078157-17|AAG24072.1| 1062|Caenorhabditis elegans Hypothetical...    28   5.6  
Z70212-5|CAA94165.3|  320|Caenorhabditis elegans Hypothetical pr...    27   7.4  
U64836-7|AAG24061.1|  674|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>AF038611-8|AAB92035.1|  111|Caenorhabditis elegans Hypothetical
           protein E04A4.7 protein.
          Length = 111

 Score =  126 bits (305), Expect = 9e-30
 Identities = 61/100 (61%), Positives = 72/100 (72%), Gaps = 1/100 (1%)
 Frame = +3

Query: 132 KWKENFRARCAQCHTVEAGGKHKVWPNLHGFYGRKTGQAPGFSYSDANKAKGITWGDDTL 311
           K K+ ++ RC QCH V++    K  P LHG  GR +G   GF YS ANK KG+ W  +TL
Sbjct: 11  KGKKVYKQRCLQCHVVDSTAT-KTGPTLHGVIGRTSGTVSGFDYSAANKNKGVVWTRETL 69

Query: 312 FEYLENPKKYIPGTKMVFAGLKKANERADLIAYLK-ESTK 428
           FEYL NPKKYIPGTKMVFAGLKKA+ERADLI Y++ ES K
Sbjct: 70  FEYLLNPKKYIPGTKMVFAGLKKADERADLIKYIEVESAK 109


>Z74046-2|CAA98555.1|  123|Caenorhabditis elegans Hypothetical
           protein ZC116.2 protein.
          Length = 123

 Score =  121 bits (291), Expect = 4e-28
 Identities = 56/95 (58%), Positives = 70/95 (73%)
 Frame = +3

Query: 132 KWKENFRARCAQCHTVEAGGKHKVWPNLHGFYGRKTGQAPGFSYSDANKAKGITWGDDTL 311
           K K+ F+ RC QCH V +  + K  P L+G  GR++GQ  GF YS ANK KG+ W   TL
Sbjct: 21  KGKKIFKQRCEQCHVVNSL-QTKTGPTLNGVIGRQSGQVAGFDYSAANKNKGVVWDRQTL 79

Query: 312 FEYLENPKKYIPGTKMVFAGLKKANERADLIAYLK 416
           F+YL +PKKYIPGTKMVFAGLKKA+ERADLI +++
Sbjct: 80  FDYLADPKKYIPGTKMVFAGLKKADERADLIKFIE 114


>Z92786-4|CAB07206.1|  553|Caenorhabditis elegans Hypothetical
           protein F47H4.7 protein.
          Length = 553

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 151 RKFSFHFQRFRRHTHDS*FSVKIELQ 74
           R F F F RFR   HD  + + +EL+
Sbjct: 96  RSFEFWFNRFRTGNHDLSYDINLELE 121


>AF078157-17|AAG24072.1| 1062|Caenorhabditis elegans Hypothetical
           protein F25E5.1 protein.
          Length = 1062

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -3

Query: 404 NKICTFIRFLQASEYHFSSRDVFLGVFKVLKQGIIAPCNTFSFVG 270
           N +  +I F++  EY   S  +  GV     QG++  C  F  VG
Sbjct: 364 NNLDNYILFVELHEYRTRSPYLCTGVATNKAQGVLMKCGDFPCVG 408


>Z70212-5|CAA94165.3|  320|Caenorhabditis elegans Hypothetical
           protein R04D3.7 protein.
          Length = 320

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 398 ICTFIRFLQASEYHFSSRDVFL 333
           ICTFI F+  +EY FS   +F+
Sbjct: 250 ICTFISFITKTEYTFSQFFIFV 271


>U64836-7|AAG24061.1|  674|Caenorhabditis elegans Hypothetical
           protein F10G2.7 protein.
          Length = 674

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 19/59 (32%), Positives = 30/59 (50%)
 Frame = +3

Query: 246 APGFSYSDANKAKGITWGDDTLFEYLENPKKYIPGTKMVFAGLKKANERADLIAYLKES 422
           A   S S++NK K ++  D    EYL+NP +      M + G  +   + D IA L++S
Sbjct: 18  ADSSSKSNSNKGKQLSRDD---VEYLQNPSEEYVDAFMKWHGNSRTVFKKDDIAQLQDS 73


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,812,546
Number of Sequences: 27780
Number of extensions: 295160
Number of successful extensions: 732
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)