Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_H10
(586 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ232888-1|ABB36783.1| 499|Apis mellifera cytochrome P450 monoo... 22 5.1
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 21 6.7
AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor p... 21 6.7
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.9
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.9
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.9
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.9
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.9
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.9
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 8.9
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 8.9
>DQ232888-1|ABB36783.1| 499|Apis mellifera cytochrome P450
monooxygenase protein.
Length = 499
Score = 21.8 bits (44), Expect = 5.1
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = +2
Query: 527 YYVIFNCTILLECHLD 574
+Y+I C++ LE +LD
Sbjct: 148 FYLIIECSLNLETYLD 163
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 21.4 bits (43), Expect = 6.7
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = +2
Query: 239 WTGPWIFLLGCQQS*RYY 292
WT P IF C+ RY+
Sbjct: 135 WTPPAIFKSSCEIDVRYF 152
>AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor
protein.
Length = 587
Score = 21.4 bits (43), Expect = 6.7
Identities = 5/9 (55%), Positives = 8/9 (88%)
Frame = +2
Query: 236 DWTGPWIFL 262
+W+GPWI +
Sbjct: 59 EWSGPWILV 67
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.0 bits (42), Expect = 8.9
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +1
Query: 268 MPTKLKVLHGAMIPCLSTLKTP 333
MP+ +K+L +PCL + P
Sbjct: 291 MPSWIKMLFLQWLPCLLRMSRP 312
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.0 bits (42), Expect = 8.9
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +1
Query: 268 MPTKLKVLHGAMIPCLSTLKTP 333
MP+ +K+L +PCL + P
Sbjct: 291 MPSWIKMLFLQWLPCLLRMSRP 312
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.0 bits (42), Expect = 8.9
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +1
Query: 268 MPTKLKVLHGAMIPCLSTLKTP 333
MP+ +K+L +PCL + P
Sbjct: 291 MPSWIKMLFLQWLPCLLRMSRP 312
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.0 bits (42), Expect = 8.9
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +1
Query: 268 MPTKLKVLHGAMIPCLSTLKTP 333
MP+ +K+L +PCL + P
Sbjct: 291 MPSWIKMLFLQWLPCLLRMSRP 312
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.0 bits (42), Expect = 8.9
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +1
Query: 268 MPTKLKVLHGAMIPCLSTLKTP 333
MP+ +K+L +PCL + P
Sbjct: 291 MPSWIKMLFLQWLPCLLRMSRP 312
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.0 bits (42), Expect = 8.9
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +1
Query: 268 MPTKLKVLHGAMIPCLSTLKTP 333
MP+ +K+L +PCL + P
Sbjct: 291 MPSWIKMLFLQWLPCLLRMSRP 312
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.0 bits (42), Expect = 8.9
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +1
Query: 268 MPTKLKVLHGAMIPCLSTLKTP 333
MP+ +K+L +PCL + P
Sbjct: 359 MPSWIKMLFLQWLPCLLRMSRP 380
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.0 bits (42), Expect = 8.9
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +1
Query: 268 MPTKLKVLHGAMIPCLSTLKTP 333
MP+ +K+L +PCL + P
Sbjct: 359 MPSWIKMLFLQWLPCLLRMSRP 380
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,314
Number of Sequences: 438
Number of extensions: 3612
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -