Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_H09
(526 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1495 + 27526008-27526390,27526462-27526876,27529162-27529323 175 2e-44
09_06_0102 + 20870346-20870518,20870599-20871013,20872180-20872341 173 7e-44
06_01_0539 + 3869156-3869908 98 3e-21
06_01_0529 + 3831100-3831852 98 3e-21
11_06_0394 - 23084485-23084577,23084677-23084802,23085134-230852... 97 8e-21
03_01_0568 - 4192514-4192606,4192694-4192753,4192837-4192932,419... 71 6e-13
06_01_0479 + 3419657-3420337 68 4e-12
05_05_0306 - 23977543-23977614,23977709-23977799,23978296-239783... 65 3e-11
01_06_1091 + 34464923-34465026,34465124-34465163,34465245-344653... 64 7e-11
02_05_0057 + 25472872-25472912,25473012-25473157,25474008-254740... 49 2e-06
03_03_0187 + 15253000-15253207,15253281-15253370,15254338-152544... 49 3e-06
02_01_0268 + 1784781-1785056,1787314-1787394,1787395-1787856 46 2e-05
07_03_1614 + 28152812-28153204,28153301-28153585,28153676-281539... 28 5.3
03_02_0204 + 6385739-6385865,6386405-6386554,6386852-6386937,638... 27 9.2
01_04_0017 - 15113479-15113580,15113950-15114117,15115011-151152... 27 9.2
>08_02_1495 + 27526008-27526390,27526462-27526876,27529162-27529323
Length = 319
Score = 175 bits (426), Expect = 2e-44
Identities = 84/123 (68%), Positives = 96/123 (78%)
Frame = +1
Query: 10 YDRAITVFSPDGHLLQVEYAQEAVRKGSTAXXXXXXXXXXXXXEKKSVAKLQEERTVRKI 189
YDRAITVFSPDGHL QVEYA EAVRKG+ A EKKS KLQ+ R++RKI
Sbjct: 74 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTVVLGVEKKSTPKLQDSRSMRKI 133
Query: 190 CLLDDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSN 369
LD H+ +A AGL ADAR+LINRA++ECQSH+LTVEDPVT+EYITRYIAGL+QKYTQS
Sbjct: 134 ASLDTHIALACAGLKADARVLINRARVECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSG 193
Query: 370 GRR 378
G R
Sbjct: 194 GVR 196
Score = 42.3 bits (95), Expect = 2e-04
Identities = 16/27 (59%), Positives = 23/27 (85%)
Frame = +3
Query: 444 LFQTEPSGIYYEWKANATGRSAKTVRE 524
L+QT+PSG + WKANATGR++ ++RE
Sbjct: 216 LYQTDPSGTFSAWKANATGRNSNSMRE 242
>09_06_0102 + 20870346-20870518,20870599-20871013,20872180-20872341
Length = 249
Score = 173 bits (421), Expect = 7e-44
Identities = 84/123 (68%), Positives = 95/123 (77%)
Frame = +1
Query: 10 YDRAITVFSPDGHLLQVEYAQEAVRKGSTAXXXXXXXXXXXXXEKKSVAKLQEERTVRKI 189
YDRAITVFSPDGHL QVEYA EAVRKG+ A EKKS KLQ+ R+VRKI
Sbjct: 4 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGSDTVVLGVEKKSTPKLQDSRSVRKI 63
Query: 190 CLLDDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSN 369
LD H+ +A AGL ADAR+LINRA++ECQSH+LTVED VT+EYITRYIAGL+QKYTQS
Sbjct: 64 ASLDTHIALACAGLKADARVLINRARVECQSHRLTVEDAVTVEYITRYIAGLQQKYTQSG 123
Query: 370 GRR 378
G R
Sbjct: 124 GVR 126
Score = 44.0 bits (99), Expect = 8e-05
Identities = 22/48 (45%), Positives = 30/48 (62%)
Frame = +3
Query: 381 PFGTYLGFDLAGIRL*MDHAHLFQTEPSGIYYEWKANATGRSAKTVRE 524
PFG L + G D L+QT+PSG + WKANATGR++ ++RE
Sbjct: 127 PFG--LSTLIVGFDPYTDKPALYQTDPSGTFSAWKANATGRNSNSMRE 172
>06_01_0539 + 3869156-3869908
Length = 250
Score = 98.3 bits (234), Expect = 3e-21
Identities = 49/140 (35%), Positives = 75/140 (53%), Gaps = 1/140 (0%)
Frame = +1
Query: 1 ARGYDRAITVFSPDGHLLQVEYAQEAVRKGSTAXXXXXXXXXXXXXEKKSVAKL-QEERT 177
+R YD T+FSP+G L QVEYA EA+ +A EKK +KL Q R+
Sbjct: 2 SRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRS 61
Query: 178 VRKICLLDDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKY 357
K+ +D H+ A AG+ +DA IL+N A++ Q + L+ ++P+ +E + + + KQ Y
Sbjct: 62 AEKMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGY 121
Query: 358 TQSNGRRTLLAHILVSTWQE 417
TQ G R L + W +
Sbjct: 122 TQFGGLRPFGVSFLFAGWDK 141
Score = 27.5 bits (58), Expect = 7.0
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3
Query: 444 LFQTEPSGIYYEWKANATGRSAKTVR 521
L+ ++PSG Y WKA A G +++ +
Sbjct: 147 LYMSDPSGNYSGWKAAAVGANSQAAQ 172
>06_01_0529 + 3831100-3831852
Length = 250
Score = 98.3 bits (234), Expect = 3e-21
Identities = 49/140 (35%), Positives = 75/140 (53%), Gaps = 1/140 (0%)
Frame = +1
Query: 1 ARGYDRAITVFSPDGHLLQVEYAQEAVRKGSTAXXXXXXXXXXXXXEKKSVAKL-QEERT 177
+R YD T+FSP+G L QVEYA EA+ +A EKK +KL Q R+
Sbjct: 2 SRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRS 61
Query: 178 VRKICLLDDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKY 357
K+ +D H+ A AG+ +DA IL+N A++ Q + L+ ++P+ +E + + + KQ Y
Sbjct: 62 AEKMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGY 121
Query: 358 TQSNGRRTLLAHILVSTWQE 417
TQ G R L + W +
Sbjct: 122 TQFGGLRPFGVSFLFAGWDK 141
Score = 27.5 bits (58), Expect = 7.0
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3
Query: 444 LFQTEPSGIYYEWKANATGRSAKTVR 521
L+ ++PSG Y WKA A G +++ +
Sbjct: 147 LYMSDPSGNYSGWKAAAVGANSQAAQ 172
>11_06_0394 -
23084485-23084577,23084677-23084802,23085134-23085236,
23085895-23085953,23086418-23086519,23086601-23086714,
23087666-23087746,23088073-23088154,23088504-23088556
Length = 270
Score = 97.1 bits (231), Expect = 8e-21
Identities = 46/120 (38%), Positives = 71/120 (59%)
Frame = +1
Query: 10 YDRAITVFSPDGHLLQVEYAQEAVRKGSTAXXXXXXXXXXXXXEKKSVAKLQEERTVRKI 189
YDR + FSP+G L QVEYA EA++ GSTA EK+ + L E +V KI
Sbjct: 21 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKDGVVLAVEKRVTSPLLEPSSVEKI 80
Query: 190 CLLDDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSN 369
+D+H+ A +GL ADAR L+ A++E Q+H+ + +P+T+E T+ I L ++ + +
Sbjct: 81 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQAICDLALRFGEGD 140
>03_01_0568 -
4192514-4192606,4192694-4192753,4192837-4192932,
4193088-4193170,4193289-4193347,4193463-4193559,
4194151-4194232,4194353-4194447,4194585-4194660
Length = 246
Score = 70.9 bits (166), Expect = 6e-13
Identities = 45/138 (32%), Positives = 70/138 (50%), Gaps = 1/138 (0%)
Frame = +1
Query: 7 GYDRAITVFSPDGHLLQVEYAQEAVRK-GSTAXXXXXXXXXXXXXEKKSVAKLQEERTVR 183
GYDR IT+FSP+G L QVEYA +AV+ G T+ +KK KL + +V
Sbjct: 8 GYDRHITIFSPEGRLYQVEYAFKAVKSAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVT 67
Query: 184 KICLLDDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQ 363
+ + ++ + GLTADAR L+ +A+ E + + ++ + ++IA Q YTQ
Sbjct: 68 HLFPITKYIGLLATGLTADARSLVYQARNEAAEFRFKWGYEMPVDVLAKWIADKAQVYTQ 127
Query: 364 SNGRRTLLAHILVSTWQE 417
R L +V + E
Sbjct: 128 HAYMRPLGVVAMVLGYDE 145
>06_01_0479 + 3419657-3420337
Length = 226
Score = 68.1 bits (159), Expect = 4e-12
Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 1/116 (0%)
Frame = +1
Query: 73 EAVRKGSTAXXXXXXXXXXXXXEKKSVAKL-QEERTVRKICLLDDHVVMAFAGLTADARI 249
EA+ +A EKK +KL Q R+ K+ +D H+ A AG+ +DA I
Sbjct: 2 EAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRSAEKMYKIDSHLACAVAGIMSDANI 61
Query: 250 LINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRTLLAHILVSTWQE 417
L+N A++ Q + L+ ++P+ +E + + + KQ YTQ G R L + W +
Sbjct: 62 LLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDK 117
Score = 27.5 bits (58), Expect = 7.0
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3
Query: 444 LFQTEPSGIYYEWKANATGRSAKTVR 521
L+ ++PSG Y WKA A G +++ +
Sbjct: 123 LYMSDPSGNYSGWKAAAVGANSQAAQ 148
>05_05_0306 -
23977543-23977614,23977709-23977799,23978296-23978361,
23978399-23978479,23979130-23979176,23979408-23979492,
23979570-23979656,23979728-23979801,23980083-23980166,
23980259-23980298,23980386-23980489
Length = 276
Score = 65.3 bits (152), Expect = 3e-11
Identities = 35/111 (31%), Positives = 59/111 (53%)
Frame = +1
Query: 7 GYDRAITVFSPDGHLLQVEYAQEAVRKGSTAXXXXXXXXXXXXXEKKSVAKLQEERTVRK 186
GYD ++T FSPDG + QVEYA +AV T EK +K+ + + R+
Sbjct: 7 GYDLSVTTFSPDGRVFQVEYAGKAVDNSGTVVGIKCKDGIVLGVEKLVTSKMILKGSNRR 66
Query: 187 ICLLDDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIA 339
+ + H +A AGL AD R +++RA+ E S++ +P+ ++ + +A
Sbjct: 67 LHSVHRHSGLAVAGLAADGRQIVSRAKSEAASYEKVYGEPMPVKELADRVA 117
>01_06_1091 +
34464923-34465026,34465124-34465163,34465245-34465328,
34465457-34465480,34465582-34465655,34465726-34465812,
34465922-34466006,34466215-34466261,34467048-34467113,
34468307-34468397,34468477-34468548
Length = 257
Score = 64.1 bits (149), Expect = 7e-11
Identities = 39/119 (32%), Positives = 61/119 (51%), Gaps = 8/119 (6%)
Frame = +1
Query: 7 GYDRAITVFSPDGHLLQVEYAQEAVRKGSTAXXXXXXXXXXXXXEKKSVAKLQEERTVRK 186
GYD ++T FSPDG + QVEYA +AV T EK +K+ E + R+
Sbjct: 7 GYDLSVTTFSPDGRVFQVEYATKAVDNSGTVVGIKCKDGIVLGVEKLVTSKMMLEGSNRR 66
Query: 187 ICLLDDHV--------VMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIA 339
I + H VMA AGL AD R +++RA+ E S++ +P++++ + +A
Sbjct: 67 IHSVHWHSGLDIILINVMAVAGLAADGRQIVSRAKSEAASYEKVYGEPISVKELADRVA 125
>02_05_0057 +
25472872-25472912,25473012-25473157,25474008-25474072,
25474182-25474228,25474922-25474997,25475176-25475243,
25475862-25475931,25476178-25476263,25476418-25476480,
25476556-25476621,25476740-25476788
Length = 258
Score = 49.2 bits (112), Expect = 2e-06
Identities = 37/159 (23%), Positives = 74/159 (46%), Gaps = 23/159 (14%)
Frame = +1
Query: 10 YDRAITVFSPDGHLLQVEYAQEAVR--------KGSTAXXX---------------XXXX 120
Y ++T FSP G L+Q+E+A AV KG++
Sbjct: 6 YSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKGASREAIPSLYFYCVMRIEKGRGAAN 65
Query: 121 XXXXXXEKKSVAKLQEERTVRKICLLDDHVVMAFAGLTADARILINRAQIECQSHKLTVE 300
EKK + L +E +V+KI L ++ + ++G+ D R+L+ +++ + Q + +
Sbjct: 66 GVVIATEKKLPSILVDETSVQKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAQQYYRLYK 125
Query: 301 DPVTLEYITRYIAGLKQKYTQSNGRRTLLAHILVSTWQE 417
+ + + + R A + Q++TQS G R +L++ + +
Sbjct: 126 ETIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLIAGYDD 164
Score = 33.9 bits (74), Expect = 0.080
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +3
Query: 444 LFQTEPSGIYYEWKANATGRSAKTVR 521
L+Q +PSG Y+ WKA+A G++ +
Sbjct: 169 LYQVDPSGSYFSWKASAMGKNVSNAK 194
>03_03_0187 +
15253000-15253207,15253281-15253370,15254338-15254402,
15254489-15254535,15255195-15255270,15255432-15255499,
15255793-15255862,15256024-15256109,15256328-15256390,
15256472-15256537,15256938-15256986
Length = 295
Score = 48.8 bits (111), Expect = 3e-06
Identities = 23/93 (24%), Positives = 53/93 (56%)
Frame = +1
Query: 139 EKKSVAKLQEERTVRKICLLDDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLE 318
EKK + L +E +V+KI L ++ + ++G+ D R+L+ +++ + Q + ++ + +
Sbjct: 109 EKKLPSILVDETSVQKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAQQYYRLYKETIPVT 168
Query: 319 YITRYIAGLKQKYTQSNGRRTLLAHILVSTWQE 417
+ R A + Q++TQS G R +L++ + +
Sbjct: 169 QLVRETAAVMQEFTQSGGVRPFGVSLLIAGYDD 201
Score = 33.9 bits (74), Expect = 0.080
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +3
Query: 444 LFQTEPSGIYYEWKANATGRSAKTVR 521
L+Q +PSG Y+ WKA+A G++ +
Sbjct: 206 LYQVDPSGSYFSWKASAMGKNVSNAK 231
>02_01_0268 + 1784781-1785056,1787314-1787394,1787395-1787856
Length = 272
Score = 46.0 bits (104), Expect = 2e-05
Identities = 26/93 (27%), Positives = 43/93 (46%)
Frame = +1
Query: 73 EAVRKGSTAXXXXXXXXXXXXXEKKSVAKLQEERTVRKICLLDDHVVMAFAGLTADARIL 252
EAV++GS K+ ++L + RK+ + DH +A AGLTAD R+L
Sbjct: 2 EAVKQGSACVGLRSRTHAVLAAANKAASELSSHQ--RKVFRVADHAGVALAGLTADGRVL 59
Query: 253 INRAQIECQSHKLTVEDPVTLEYITRYIAGLKQ 351
+ EC +H + P+ + + +A Q
Sbjct: 60 SRFLRSECINHAFVYDAPLPVSRLALRLADKAQ 92
Score = 27.9 bits (59), Expect = 5.3
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Frame = +3
Query: 438 AHLFQTEPSGIYYEWKANATG---RSAKTVRE 524
AHL+ PSG Y+E++A A G ++AKT E
Sbjct: 144 AHLYYNCPSGNYFEYQAFAIGSRSQAAKTFLE 175
>07_03_1614 +
28152812-28153204,28153301-28153585,28153676-28153993,
28154657-28154884,28155390-28155490,28156204-28156321,
28156445-28156726
Length = 574
Score = 27.9 bits (59), Expect = 5.3
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = +1
Query: 148 SVAKLQEERTVRKIC---LLDDHVVMAFAGLTADARILINRAQIECQSHKL 291
+V KL T R C L+ D++V AGL A I Q++C H+L
Sbjct: 184 NVIKLDGLVTSRMSCSLYLVFDYMVHDLAGLAASPEIKFTLPQVKCYVHQL 234
>03_02_0204 +
6385739-6385865,6386405-6386554,6386852-6386937,
6387335-6387429,6387536-6387661,6387756-6387894
Length = 240
Score = 27.1 bits (57), Expect = 9.2
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +3
Query: 372 PPDPFGTYLGFDLAGIRL*MDHAHLFQTEPSGIYYEWK 485
P P GT G D G+ + HA F GI Y W+
Sbjct: 53 PSHPQGTR-GRDARGMSVLQQHAAFFDRNGDGIIYPWE 89
>01_04_0017 -
15113479-15113580,15113950-15114117,15115011-15115229,
15115303-15115446,15115558-15115840,15115936-15115991,
15116067-15116216,15116299-15116385,15116463-15116498,
15116746-15116808,15116887-15116967,15117053-15117142,
15117349-15117426,15117510-15117731,15117788-15117835,
15117948-15118133,15120910-15121009,15121107-15121246
Length = 750
Score = 27.1 bits (57), Expect = 9.2
Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 4/75 (5%)
Frame = +1
Query: 64 YAQEAVRKGSTAXXXXXXXXXXXXXEKKSVAKLQEERTVRKICLLDD----HVVMAFAGL 231
+ Q +G+ EKK + LQE+ VRKI L D +V F G
Sbjct: 313 FKQHVTNEGTALVKQAEDAASNKKPEKKEIVGLQEQVFVRKIIELHDKYVAYVTDCFQGH 372
Query: 232 TADARILINRAQIEC 276
T + L ++ C
Sbjct: 373 TLFHKALKEAFEVFC 387
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,384,975
Number of Sequences: 37544
Number of extensions: 220185
Number of successful extensions: 514
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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