Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_H06
(262 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 29 0.13
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch... 26 0.72
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po... 26 0.72
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ... 26 0.72
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|... 25 1.3
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 25 1.3
SPAPB17E12.02 |yip12|yip1, yip1-b|SMN family protein Yip12|Schiz... 25 1.3
SPAC19B12.12c |yip11|yip1, yip1-a|SMN family protein Yip11|Schiz... 25 1.3
SPCC569.06 |||S. pombe specific multicopy membrane protein famil... 25 1.7
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 25 1.7
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe... 25 2.2
SPAC4D7.11 |||conserved fungal protein|Schizosaccharomyces pombe... 25 2.2
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr... 24 2.9
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 24 2.9
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 24 2.9
SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual 24 3.8
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 24 3.8
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 23 5.1
SPAC23H3.07c |mrp2||mitochondrial ribosomal protein subunit S14|... 23 5.1
SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch... 23 5.1
SPCC126.01c ||SPCC576.18c|conserved fungal protein|Schizosacchar... 23 5.1
SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme Ubc6|Schizosacc... 23 6.7
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c... 23 6.7
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual 23 6.7
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom... 23 8.8
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy... 23 8.8
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po... 23 8.8
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c... 23 8.8
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p... 23 8.8
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 23 8.8
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 23 8.8
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 28.7 bits (61), Expect = 0.13
Identities = 9/35 (25%), Positives = 25/35 (71%)
Frame = +1
Query: 31 KDVSKQDMDPELDDLLDSALQDMTKKEQKSESQEV 135
++++++++DP + +L + A Q+ +KEQ E++ +
Sbjct: 691 EEIARRNVDPMVSELSERAAQERERKEQAKEAKRL 725
>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 356
Score = 26.2 bits (55), Expect = 0.72
Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Frame = -2
Query: 255 LFLWNST*TAKDSGHIAVKQCS-C-LCNELITPHVLWSFCCIYLLGFTLLFLFCHVLKCT 82
+F N T K K C C +C E H +W C+ L FLF L CT
Sbjct: 154 IFFPNKCSTCKFEKPARSKHCRLCNICVEKFDHHCIWINNCVGLNNARYFFLF---LLCT 210
Query: 81 VQ 76
+Q
Sbjct: 211 IQ 212
>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 562
Score = 26.2 bits (55), Expect = 0.72
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +1
Query: 151 PQNMWSDEFITEAAALFDSNMAAILGRL 234
P +MW FIT+ AAL + + +L
Sbjct: 218 PVSMWKKAFITKRAALLERQAVGVYSKL 245
>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 26.2 bits (55), Expect = 0.72
Identities = 14/51 (27%), Positives = 32/51 (62%)
Frame = +1
Query: 22 SDNKDVSKQDMDPELDDLLDSALQDMTKKEQKSESQEVNATEAPQNMWSDE 174
+DN D QD++ + +++D A +++++ + K + +A +A + +WSDE
Sbjct: 22 TDNFDAEMQDLNGYISEIVDEA-RNVSEVDAKFLG-DTSALQA-EGLWSDE 69
>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 574
Score = 25.4 bits (53), Expect = 1.3
Identities = 10/31 (32%), Positives = 13/31 (41%)
Frame = -2
Query: 171 ITPHVLWSFCCIYLLGFTLLFLFCHVLKCTV 79
+ P W Y L F L F H L+C +
Sbjct: 330 VLPRSSWVLASFYSLHFLWLCTFFHALQCAI 360
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 25.4 bits (53), Expect = 1.3
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +1
Query: 22 SDNKDVS-KQDMDPELDDLLDSALQDMTKKEQK 117
S+ +S + + PEL LL+ A QD+ K QK
Sbjct: 530 SERSSISPSKPLSPELKPLLNEAFQDIEKTLQK 562
>SPAPB17E12.02 |yip12|yip1, yip1-b|SMN family protein
Yip12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 235
Score = 25.4 bits (53), Expect = 1.3
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +1
Query: 34 DVSKQDMDPELDDLLDSALQDMTKKEQKSESQEVNATEAPQNM 162
+ K+ DP L LL+ ++ + EQ ES ++A+ P+N+
Sbjct: 86 EAGKKSFDPFLRYLLNIIDKEGERLEQYMESSSLDASILPKNL 128
>SPAC19B12.12c |yip11|yip1, yip1-a|SMN family protein
Yip11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 235
Score = 25.4 bits (53), Expect = 1.3
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +1
Query: 34 DVSKQDMDPELDDLLDSALQDMTKKEQKSESQEVNATEAPQNM 162
+ K+ DP L LL+ ++ + EQ ES ++A+ P+N+
Sbjct: 86 EAGKKSFDPFLRYLLNIIDKEGERLEQYMESSSLDASILPKNL 128
>SPCC569.06 |||S. pombe specific multicopy membrane protein family
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 478
Score = 25.0 bits (52), Expect = 1.7
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -1
Query: 115 FVPFLSCLEVHCPIDR 68
F+PF S L +H P+DR
Sbjct: 58 FIPFQSDLGLHSPVDR 73
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 25.0 bits (52), Expect = 1.7
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -1
Query: 175 THHSTCSVELLLHLPLGIHSFVPFLSCLEVHCPI 74
TH S+ +E+++ P+ F+P +CL + PI
Sbjct: 396 THRSSGPLEVIVEGPVWDSKFLPDFNCLSLIEPI 429
>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 738
Score = 24.6 bits (51), Expect = 2.2
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = +1
Query: 151 PQNMWSDEFITEAAALFDSNMAAILGRLSGVPEEQI 258
P M + F+ E A +N + ++ ++ G+P EQ+
Sbjct: 465 PVGMTEEHFLREYAQHSVANPSLLIHQIHGLPSEQV 500
>SPAC4D7.11 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 281
Score = 24.6 bits (51), Expect = 2.2
Identities = 11/44 (25%), Positives = 21/44 (47%)
Frame = +1
Query: 130 EVNATEAPQNMWSDEFITEAAALFDSNMAAILGRLSGVPEEQIT 261
EV++ + +W ++ TE A N + + +GVP +T
Sbjct: 235 EVDSEDWKDLVWKSQYATENANTNSINNSPLSSNTTGVPNSVLT 278
>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 703
Score = 24.2 bits (50), Expect = 2.9
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -2
Query: 153 WSFCCIYLLGFTLLF 109
WS CC+Y+L LF
Sbjct: 20 WSLCCLYILMQFFLF 34
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 24.2 bits (50), Expect = 2.9
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +1
Query: 43 KQDMDPELDDLLDSALQDMTKKEQKSESQE-VNATEAPQNMWSDEF 177
+ D+D D+ ++ L+D K + E +E VNA E +N+ + +F
Sbjct: 345 QDDVDQATDNNTNTILEDDEKDNDEEEEEEIVNARE--KNLLNQQF 388
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1919
Score = 24.2 bits (50), Expect = 2.9
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +1
Query: 43 KQDMDPELDDLLDSALQDMTKKEQKSESQE-VNATEAPQNMWSDEF 177
+ D+D D+ ++ L+D K + E +E VNA E +N+ + +F
Sbjct: 345 QDDVDQATDNNTNTILEDDEKDNDEEEEEEIVNARE--KNLLNQQF 388
>SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual
Length = 629
Score = 23.8 bits (49), Expect = 3.8
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +1
Query: 55 DPELDDLLD-SALQDMTKKEQKSESQEVNATE 147
+P LDD+LD S LQ T+ + + E+ A E
Sbjct: 467 EPSLDDILDTSLLQPSTQTDLQEENSVSFAQE 498
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 23.8 bits (49), Expect = 3.8
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -2
Query: 222 DSGHIAVKQCSCLCNELITPHV 157
D HIA K + L N ++PH+
Sbjct: 69 DETHIATKASASLRNNNVSPHI 90
>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
1|||Manual
Length = 468
Score = 23.4 bits (48), Expect = 5.1
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +1
Query: 97 MTKKEQKSESQEVNATEAPQNMWSDEFITEAAALFDS 207
+TK+ + QE+ EA N ++ +TEA + S
Sbjct: 416 VTKQRIEKAKQEIEKLEAKYNSKEEKTLTEADMVISS 452
>SPAC23H3.07c |mrp2||mitochondrial ribosomal protein subunit
S14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 105
Score = 23.4 bits (48), Expect = 5.1
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +3
Query: 33 RCIETRHGPGIGRSIG 80
RCIET G G+ R+ G
Sbjct: 67 RCIETGRGRGVFRAFG 82
>SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 274
Score = 23.4 bits (48), Expect = 5.1
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +1
Query: 22 SDNKDVSKQDMDPELDD 72
S N +S +D+D ELD+
Sbjct: 206 SSNNSISHEDLDKELDE 222
>SPCC126.01c ||SPCC576.18c|conserved fungal
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 369
Score = 23.4 bits (48), Expect = 5.1
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 79 DSALQDMTKKEQKSESQEVN 138
+SALQD +KE+KS + N
Sbjct: 13 ESALQDEKRKEEKSHNPNGN 32
>SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme
Ubc6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 23.0 bits (47), Expect = 6.7
Identities = 7/21 (33%), Positives = 12/21 (57%)
Frame = +2
Query: 11 TKLCLITKMYRNKTWTRNWTI 73
T+LCL + K+W +W +
Sbjct: 84 TRLCLSFSDFHPKSWNPSWMV 104
>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1142
Score = 23.0 bits (47), Expect = 6.7
Identities = 6/15 (40%), Positives = 11/15 (73%)
Frame = +2
Query: 53 WTRNWTIYWTVHFKT 97
W RN +++W++ F T
Sbjct: 1025 WARNLSMHWSIPFPT 1039
>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 978
Score = 23.0 bits (47), Expect = 6.7
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 19 MSDNKDVSKQDMDPELDDLLDSALQDMTKKEQKSESQE 132
+SD+ D + + P L DLL S ++ + KE + +E
Sbjct: 339 LSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKE 376
>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 581
Score = 22.6 bits (46), Expect = 8.8
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +1
Query: 55 DPELDDLLDSALQDMTKKEQKSESQEV 135
+PE+ +LDS L+D K+ S V
Sbjct: 234 NPEIRMMLDSGLRDWRKQRSGRSSSHV 260
>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 22.6 bits (46), Expect = 8.8
Identities = 6/15 (40%), Positives = 13/15 (86%)
Frame = -2
Query: 198 QCSCLCNELITPHVL 154
+C+C+ +LI+P++L
Sbjct: 524 KCACMLRDLISPYLL 538
>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 22.6 bits (46), Expect = 8.8
Identities = 9/34 (26%), Positives = 16/34 (47%)
Frame = -2
Query: 180 NELITPHVLWSFCCIYLLGFTLLFLFCHVLKCTV 79
N + V+W + + L+GF F V K ++
Sbjct: 443 NHCSSKRVVWLYTILQLIGFGATFAITQVDKASI 476
>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 796
Score = 22.6 bits (46), Expect = 8.8
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = -2
Query: 189 CLCNELITPHVLWSFCCIYLLGF 121
CLC +I+P +L +++GF
Sbjct: 645 CLCYSIISPLILVFGLIYFIIGF 667
>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 22.6 bits (46), Expect = 8.8
Identities = 10/41 (24%), Positives = 21/41 (51%)
Frame = +1
Query: 55 DPELDDLLDSALQDMTKKEQKSESQEVNATEAPQNMWSDEF 177
+ E ++ + A + + +KE++ +EV+ SDEF
Sbjct: 155 ESESEEQISKATKKVKQKEEEEYVEEVDEKSLKNESSSDEF 195
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 22.6 bits (46), Expect = 8.8
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = +1
Query: 97 MTKKEQKSESQEVNATEAPQNMWSDEFITEAAALFDSNMAAILGRLSG 240
+T+K+ + + +N E + +WS + T L D M LSG
Sbjct: 957 VTRKKDNACFKMMNFEEIERRLWSGRYCTPKEFLRDIKMIKQDAILSG 1004
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 22.6 bits (46), Expect = 8.8
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -2
Query: 69 VQFRVHVLFRYIFVIRHNL 13
V+ V +LFR I VI HN+
Sbjct: 3603 VKVNVELLFRRISVISHNV 3621
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.313 0.127 0.345
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,187,356
Number of Sequences: 5004
Number of extensions: 22346
Number of successful extensions: 77
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 51430850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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