Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_H06
(262 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0325 + 14428065-14428799,14428916-14428993,14429607-144298... 30 0.29
03_06_0583 + 34901636-34901721,34901805-34901902,34902029-349021... 28 0.90
09_02_0121 + 4502628-4502696,4503727-4503829,4504205-4504328,450... 28 1.2
05_01_0290 + 2270749-2271037,2272227-2272363,2272660-2272805,227... 27 1.6
03_03_0125 - 14630078-14630136,14630197-14631160 27 2.1
03_03_0122 - 14617879-14618871 27 2.1
05_04_0209 - 19073147-19074041,19074117-19074163,19074258-190744... 27 2.7
04_04_0285 - 24136865-24137000,24137554-24137611,24138142-241414... 27 2.7
06_03_0478 - 21259376-21259465,21259862-21259924,21260025-212600... 26 4.8
06_03_0732 + 23965090-23965431,23965610-23965746,23967359-239674... 25 6.3
04_03_0846 - 20249085-20249192,20249418-20249501,20249687-202498... 25 6.3
09_04_0635 - 19143721-19145165,19145255-19145306 25 8.4
08_02_1187 - 25036023-25038443,25038636-25039939,25040033-25040135 25 8.4
03_05_0243 - 22275425-22276402,22277192-22277307,22277434-22279012 25 8.4
02_05_0570 + 30070338-30071606 25 8.4
02_01_0680 + 5054306-5056411,5057200-5057243,5057549-5057664,505... 25 8.4
01_05_0645 - 23899579-23904483 25 8.4
01_01_1116 + 8839946-8840048,8840142-8842064,8842192-8842307,884... 25 8.4
01_01_0538 - 3938389-3939727,3939828-3940203,3940299-3940516,394... 25 8.4
>06_02_0325 +
14428065-14428799,14428916-14428993,14429607-14429844,
14431199-14431296,14431770-14432063,14432418-14432702
Length = 575
Score = 29.9 bits (64), Expect = 0.29
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +1
Query: 103 KKEQKSESQEVNATEAPQNMWSDEFITEAAALFDSNMAAIL-GRLSGVPEEQ 255
+ +QK SQE+ + P + F+ A LF SN +++ GR S ++Q
Sbjct: 504 RSQQKQTSQEIEMEDYPIQKENQSFLQLCARLFPSNQSSVFRGRHSLFQQQQ 555
>03_06_0583 +
34901636-34901721,34901805-34901902,34902029-34902167,
34902262-34902290,34902406-34902502,34902593-34902648,
34902759-34902866,34902988-34903044,34905585-34905679,
34905822-34905998,34906086-34906189,34906595-34906664,
34906774-34906833
Length = 391
Score = 28.3 bits (60), Expect = 0.90
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +1
Query: 16 IMSDNKDVSKQDMDPELDDLLDSALQDMTKKEQKSESQEVNATEAP 153
+ + ++K+D+ P +D DS ++T Q S SQE A E+P
Sbjct: 220 VTEEGDPIAKRDLVPNVDS--DSKPSNVTGGAQHSASQESQAGESP 263
>09_02_0121 +
4502628-4502696,4503727-4503829,4504205-4504328,
4505963-4506306,4506383-4506487,4507907-4508288,
4509173-4509437,4509936-4510094,4511150-4511201,
4511266-4511462,4512865-4513350,4513797-4514093
Length = 860
Score = 27.9 bits (59), Expect = 1.2
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -1
Query: 166 STCSVELLLHLPLGIHSFV-PFLSCLEVHCPIDRPIP 59
STC++ + HLP GI+SFV P + + P +P
Sbjct: 591 STCAMAAVDHLPQGINSFVLPSVGSTPLATPTPGAVP 627
>05_01_0290 +
2270749-2271037,2272227-2272363,2272660-2272805,
2272853-2272877
Length = 198
Score = 27.5 bits (58), Expect = 1.6
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +1
Query: 28 NKDVSKQDMDPELDDLLDSALQDMT 102
N DV D DP+ DDL+D D T
Sbjct: 6 NADVEAVDFDPDDDDLMDEDAADPT 30
>03_03_0125 - 14630078-14630136,14630197-14631160
Length = 340
Score = 27.1 bits (57), Expect = 2.1
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 133 VNATEAPQNMWSDEFITEAAALF 201
V AT+AP W + ++ +AAA F
Sbjct: 302 VGATDAPPEAWENGYLADAAASF 324
>03_03_0122 - 14617879-14618871
Length = 330
Score = 27.1 bits (57), Expect = 2.1
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 133 VNATEAPQNMWSDEFITEAAALFDSNMA 216
+ AT+AP W + ++ +AA + SN A
Sbjct: 298 IGATDAPPETWENGYLADAAGTWLSNSA 325
>05_04_0209 - 19073147-19074041,19074117-19074163,19074258-19074437,
19074839-19074955,19075105-19075227,19075391-19075776,
19076177-19076303,19077140-19077202,19078035-19078086,
19078189-19080023
Length = 1274
Score = 26.6 bits (56), Expect = 2.7
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Frame = +1
Query: 76 LDSALQDMTKKEQKSESQEVNATEAPQNMW---SDEFITEAAALFDSNMAAILGRLSGVP 246
++ L+D+ KE+K++ + AT+A +++ + E E + L S + RLS +
Sbjct: 831 INQMLEDIKLKEEKTKQAVLEATQAGNDIFVKVAGEVFAEQSIL-ASEAHGLQARLSNIS 889
Query: 247 EEQ 255
EE+
Sbjct: 890 EER 892
>04_04_0285 -
24136865-24137000,24137554-24137611,24138142-24141480,
24141789-24142218,24142861-24142928,24143015-24143165
Length = 1393
Score = 26.6 bits (56), Expect = 2.7
Identities = 15/61 (24%), Positives = 27/61 (44%)
Frame = +1
Query: 16 IMSDNKDVSKQDMDPELDDLLDSALQDMTKKEQKSESQEVNATEAPQNMWSDEFITEAAA 195
+MSD + + D +DDL+ +D T + + S+ V E DE + E +
Sbjct: 353 LMSDAQATANLVADQGIDDLVHKEYKDPTMGDMVNSSEVVAGAEKSTKGRHDESVVETSK 412
Query: 196 L 198
+
Sbjct: 413 M 413
>06_03_0478 - 21259376-21259465,21259862-21259924,21260025-21260066,
21260180-21260461,21261084-21261587,21261973-21261981,
21262122-21262196,21262375-21262449,21262557-21263494,
21263577-21263607,21263694-21263979,21264691-21264905,
21265329-21265437,21265556-21265611,21265730-21265822,
21266348-21266393,21266496-21267221,21267489-21267550,
21267738-21268013,21268604-21268735,21268835-21268909
Length = 1394
Score = 25.8 bits (54), Expect = 4.8
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Frame = +1
Query: 31 KDVSKQDMDPELDDLLDSALQDMTKK--EQKSESQEVNATEAPQNMWSDE------FITE 186
++V KQ D + D D A D KK +QK++S++ + T+ + SDE FI +
Sbjct: 949 QEVLKQK-DIKQDGKNDKAKDDKEKKSRDQKTDSKQKSLTDTKEKKKSDEPPKHPGFILQ 1007
Query: 187 AAALFDSNMAAILGRLSGV 243
A DS + + L G+
Sbjct: 1008 AKRSKDSKVRSTSLSLDGL 1026
>06_03_0732 +
23965090-23965431,23965610-23965746,23967359-23967417,
23968817-23970135
Length = 618
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = -2
Query: 228 AKDSGHIAVKQCSCLCNELITPHVLWSFCC---IYLLGF 121
+K ++ QC C + L++ +LW FCC +Y+L +
Sbjct: 100 SKSLSVMSESQCECEVS-LVSELLLWLFCCALNLYILTY 137
>04_03_0846 -
20249085-20249192,20249418-20249501,20249687-20249803,
20249899-20249979,20250563-20250622,20250762-20250804,
20250899-20250997,20251260-20251531,20251765-20251886,
20252376-20252517
Length = 375
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 67 DDLLDSALQDMTKKEQKSESQ 129
DDLL SA D+ +EQ ESQ
Sbjct: 68 DDLLSSAEPDVETQEQPEESQ 88
>09_04_0635 - 19143721-19145165,19145255-19145306
Length = 498
Score = 25.0 bits (52), Expect = 8.4
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = +1
Query: 64 LDDLLDSALQDMTKKEQKSESQEVNATEAPQNMWSDEFITEA--AALFDSNMAAILGRLS 237
LD++LD+ + M K + T P ++ A AA+++ N+AA + R
Sbjct: 255 LDEMLDAVVHAMAKLGYGGVKLGIAETGWPNGGDYEQIGCNAHNAAIYNRNLAARMARSP 314
Query: 238 GVP 246
G P
Sbjct: 315 GTP 317
>08_02_1187 - 25036023-25038443,25038636-25039939,25040033-25040135
Length = 1275
Score = 25.0 bits (52), Expect = 8.4
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +1
Query: 91 QDMTKKEQKSESQEVNATEAPQNMW 165
++M KKEQKSE++++ + W
Sbjct: 360 KNMIKKEQKSEAEDLTVIKKVSTEW 384
>03_05_0243 - 22275425-22276402,22277192-22277307,22277434-22279012
Length = 890
Score = 25.0 bits (52), Expect = 8.4
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +1
Query: 91 QDMTKKEQKSESQEVNATEAPQNMW 165
++M KKEQKSE++++ + W
Sbjct: 211 KNMIKKEQKSEAEDLTVIKKVSTEW 235
>02_05_0570 + 30070338-30071606
Length = 422
Score = 25.0 bits (52), Expect = 8.4
Identities = 15/59 (25%), Positives = 23/59 (38%)
Frame = +1
Query: 73 LLDSALQDMTKKEQKSESQEVNATEAPQNMWSDEFITEAAALFDSNMAAILGRLSGVPE 249
+L S +D E +S V + W D+ E+ F+ I GRL + E
Sbjct: 249 VLTSTFKDKVFNESDDQSALVYMLLQSGSPWRDKVYLESDYYFEGYWLEIAGRLGNITE 307
>02_01_0680 +
5054306-5056411,5057200-5057243,5057549-5057664,
5057942-5058036
Length = 786
Score = 25.0 bits (52), Expect = 8.4
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -1
Query: 163 TCSVELLLHLPLGIHSFVPFLSCLEVH 83
T S LLLH P H ++CLE H
Sbjct: 23 TTSGHLLLHPPSARHLLNSLVNCLEPH 49
>01_05_0645 - 23899579-23904483
Length = 1634
Score = 25.0 bits (52), Expect = 8.4
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +1
Query: 91 QDMTKKEQKSESQEVNATEAPQNMW 165
++M KKEQKSE++++ + W
Sbjct: 211 KNMIKKEQKSEAEDLTVIKKVSTEW 235
>01_01_1116 +
8839946-8840048,8840142-8842064,8842192-8842307,
8843340-8843763,8845187-8845452
Length = 943
Score = 25.0 bits (52), Expect = 8.4
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +1
Query: 91 QDMTKKEQKSESQEVNATEAPQNMW 165
++M KKEQKSE++++ + W
Sbjct: 360 KNMMKKEQKSEAEDLTVIKKVSTEW 384
>01_01_0538 -
3938389-3939727,3939828-3940203,3940299-3940516,
3940607-3940769,3940866-3941100,3941186-3941353
Length = 832
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +3
Query: 51 HGPGIGRSIGQCTSRHDKKGT 113
H G+GRS G H KGT
Sbjct: 649 HRQGVGRSEGDANMNHTGKGT 669
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.313 0.127 0.345
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,749,024
Number of Sequences: 37544
Number of extensions: 147788
Number of successful extensions: 308
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 308
length of database: 14,793,348
effective HSP length: 65
effective length of database: 12,352,988
effective search space used: 259412748
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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