Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_H04
(529 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 52 4e-08
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 34 0.011
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 33 0.035
SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9 |Schizosacchar... 28 0.99
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 26 3.0
SPAC212.01c |||S. pombe specific DUF999 family protein 2|Schizos... 25 7.0
SPBCPT2R1.04c |||S. pombe specific DUF999 protein family 10|Schi... 25 7.0
SPAC212.04c |||S. pombe specific DUF999 family protein 1|Schizos... 25 7.0
SPBCPT2R1.01c ||SPBPB2B2.20c|S. pombe specific DUF999 protein fa... 25 7.0
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 7.0
SPBC1348.01 |||S. pombe specific DUF999 protein family 5|Schizos... 25 7.0
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 25 7.0
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |... 25 9.2
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 52.4 bits (120), Expect = 4e-08
Identities = 22/39 (56%), Positives = 31/39 (79%)
Frame = +2
Query: 17 AKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMA 133
AKGT+Y +FT N++QA++LVS+L EA Q I P+L+ MA
Sbjct: 465 AKGTAYTYFTSDNAKQARELVSILSEAKQDIDPKLEEMA 503
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 34.3 bits (75), Expect = 0.011
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +2
Query: 11 SKAKGTSYAFFTPSNSRQAKDLVSVLQEANQII 109
+ KGT+ FFTP + A +LV+VL++A Q I
Sbjct: 510 ANTKGTAITFFTPQDKSHAGELVNVLRQAKQDI 542
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 32.7 bits (71), Expect = 0.035
Identities = 17/37 (45%), Positives = 23/37 (62%)
Frame = +2
Query: 23 GTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMA 133
G + AFF +N AK+L+ +LQEANQ L +MA
Sbjct: 528 GQAVAFFNRNNKGIAKELIELLQEANQECPSFLIAMA 564
>SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 524
Score = 27.9 bits (59), Expect = 0.99
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Frame = -2
Query: 96 ASCKTETRSLAWRELDGVKNA---YEVPLALDPS 4
A+C ETR W+ L G+ N+ + +PL + PS
Sbjct: 482 AACGRETRVGRWKTLRGIPNSGFVFNIPLTVIPS 515
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 26.2 bits (55), Expect = 3.0
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = +1
Query: 148 WRRWMEQKQIWRRT 189
WRRW+E + WR++
Sbjct: 1120 WRRWLESDEGWRKS 1133
>SPAC212.01c |||S. pombe specific DUF999 family protein
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 25.0 bits (52), Expect = 7.0
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = -1
Query: 493 NTLVYLNNLQQITVNKISQYEHNIHTNLCKFQNNH 389
NT+ + I NKI ++ +++ T KF N++
Sbjct: 59 NTIKPQKDKMNIKTNKIKEFLNDLFTEFSKFHNSY 93
>SPBCPT2R1.04c |||S. pombe specific DUF999 protein family
10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 280
Score = 25.0 bits (52), Expect = 7.0
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = -1
Query: 493 NTLVYLNNLQQITVNKISQYEHNIHTNLCKFQNNH 389
NT+ + I NKI ++ +++ T KF N++
Sbjct: 59 NTIKPQKDKMNIKTNKIKEFLNDLFTEFSKFHNSY 93
>SPAC212.04c |||S. pombe specific DUF999 family protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 288
Score = 25.0 bits (52), Expect = 7.0
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = -1
Query: 493 NTLVYLNNLQQITVNKISQYEHNIHTNLCKFQNNH 389
NT+ + I NKI ++ +++ T KF N++
Sbjct: 59 NTIKPQKDKMNIKTNKIKEFLNDLFTEFSKFHNSY 93
>SPBCPT2R1.01c ||SPBPB2B2.20c|S. pombe specific DUF999 protein
family 9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 25.0 bits (52), Expect = 7.0
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = -1
Query: 493 NTLVYLNNLQQITVNKISQYEHNIHTNLCKFQNNH 389
NT+ + I NKI ++ +++ T KF N++
Sbjct: 59 NTIKPQKDKMNIKTNKIKEFLNDLFTEFSKFHNSY 93
>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 25.0 bits (52), Expect = 7.0
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 14 KAKGTSYAFFTPSNSRQAKDLVSVLQEANQIISP 115
K + F PSNS KDL +V ++ N++ SP
Sbjct: 263 KPDSNNCGFLLPSNSTSIKDLKNV-KKGNRLNSP 295
>SPBC1348.01 |||S. pombe specific DUF999 protein family
5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 25.0 bits (52), Expect = 7.0
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = -1
Query: 493 NTLVYLNNLQQITVNKISQYEHNIHTNLCKFQNNH 389
NT+ + I NKI ++ +++ T KF N++
Sbjct: 59 NTIKPQKDKMNIKTNKIKEFLNDLFTEFSKFHNSY 93
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 25.0 bits (52), Expect = 7.0
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -3
Query: 338 TQVLIRGLLLTVKIHTIKFKLDINSHQIF 252
T L GL LT+ I+T+K + + + +F
Sbjct: 1254 TSFLESGLALTIPINTVKIRYENGTEDVF 1282
>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 777
Score = 24.6 bits (51), Expect = 9.2
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -1
Query: 508 SKSSINTLVYLNNLQQITVNKISQYEHNIHT 416
SK SI+ L QQ+ N+I YE +T
Sbjct: 109 SKMSIDHSQKLQTSQQVLTNQIKSYEKKYYT 139
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,746,332
Number of Sequences: 5004
Number of extensions: 28530
Number of successful extensions: 76
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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