Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_H04
(529 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1758 - 39681942-39682030,39682115-39682345,39682643-396826... 48 5e-06
01_01_0682 - 5244805-5244919,5246468-5246613,5246813-5246994,524... 44 6e-05
11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249... 43 2e-04
01_01_0509 - 3713109-3713244,3713689-3713733,3713959-3714015,371... 41 5e-04
01_05_0292 + 20518668-20519090,20519213-20519281,20520204-205204... 36 0.015
11_06_0300 + 22095396-22096145,22096261-22096344,22097062-220973... 31 0.76
07_01_0725 - 5532803-5533324,5533631-5533657,5534285-5534398,553... 30 1.0
08_01_0397 - 3509186-3510291,3510322-3512335 29 2.3
06_03_0806 + 24788441-24789049 27 7.1
03_06_0365 - 33399422-33399925,33400470-33400583,33400762-334009... 27 7.1
>01_06_1758 -
39681942-39682030,39682115-39682345,39682643-39682679,
39683604-39683835,39683937-39684022,39684126-39684218,
39684302-39684465,39684541-39684702,39684783-39684962,
39685079-39685515,39685614-39685669
Length = 588
Score = 48.0 bits (109), Expect = 5e-06
Identities = 19/39 (48%), Positives = 32/39 (82%)
Frame = +2
Query: 17 AKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMA 133
A GT++ FFT SN++ +++LV +L+EA Q+++P L+SMA
Sbjct: 514 ASGTAFTFFTLSNAKFSRNLVKILREAGQVVNPALESMA 552
>01_01_0682 -
5244805-5244919,5246468-5246613,5246813-5246994,
5247069-5247295,5247382-5247467,5247564-5247656,
5247964-5248118,5248407-5248490,5248589-5248768,
5249587-5249828,5249927-5249982
Length = 521
Score = 44.4 bits (100), Expect = 6e-05
Identities = 18/29 (62%), Positives = 25/29 (86%)
Frame = +2
Query: 17 AKGTSYAFFTPSNSRQAKDLVSVLQEANQ 103
AKGT+Y FFT +N+R AKDL+++L+EA Q
Sbjct: 406 AKGTAYTFFTAANARFAKDLINILEEAGQ 434
>11_06_0767 + 27121761-27123335,27123701-27123910,27124843-27124911,
27125387-27125656,27126027-27126377,27126480-27126757,
27126887-27128330
Length = 1398
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/39 (51%), Positives = 26/39 (66%)
Frame = +2
Query: 17 AKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMA 133
A G SY FF+ + + A DLV VL+ ANQ + P+LQ MA
Sbjct: 944 ATGVSYTFFSEQDWKYAGDLVKVLEGANQHVPPELQEMA 982
>01_01_0509 -
3713109-3713244,3713689-3713733,3713959-3714015,
3714088-3714438,3714585-3714862,3714939-3715289,
3715378-3715647,3716035-3716103,3716194-3716304,
3716503-3716583,3716825-3716914,3717032-3717262
Length = 689
Score = 41.1 bits (92), Expect = 5e-04
Identities = 18/38 (47%), Positives = 25/38 (65%)
Frame = +2
Query: 17 AKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSM 130
A G +Y FF +S+ A DLV +L+ ANQ +S QL+ M
Sbjct: 520 ATGVAYTFFCDQDSKYASDLVKILEGANQSVSQQLRDM 557
>01_05_0292 +
20518668-20519090,20519213-20519281,20520204-20520473,
20520734-20521084,20521251-20521528,20522755-20523099,
20523346-20523911,20525155-20525528
Length = 891
Score = 36.3 bits (80), Expect = 0.015
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +2
Query: 17 AKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMA 133
A G +Y FF +S+ A DL+ +L+ ANQ + L MA
Sbjct: 490 ATGVAYTFFCDQDSKYAADLIKILEGANQRVPRDLADMA 528
>11_06_0300 +
22095396-22096145,22096261-22096344,22097062-22097304,
22098535-22098702,22098895-22099008,22099378-22099890
Length = 623
Score = 30.7 bits (66), Expect = 0.76
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 23 GTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMA 133
G + AFF +NS A+ L ++QE+NQ + L A
Sbjct: 514 GLATAFFNENNSSMARSLAELMQESNQEVPAWLSRYA 550
>07_01_0725 -
5532803-5533324,5533631-5533657,5534285-5534398,
5534564-5534731,5535951-5536193,5537178-5537261,
5537357-5538117,5539637-5539730,5540633-5540899,
5541311-5541316,5542538-5542657
Length = 801
Score = 30.3 bits (65), Expect = 1.0
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +2
Query: 23 GTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMA 133
G + AFF SN+ A+ L ++QEANQ + L+ A
Sbjct: 689 GLATAFFNESNTPLARPLSELMQEANQEVPQWLERYA 725
>08_01_0397 - 3509186-3510291,3510322-3512335
Length = 1039
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 20 KGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMAD 136
KG + F + R A DLV L+ + Q + L+ +AD
Sbjct: 758 KGFAVTFISEEEERYAPDLVKALELSEQAVPEDLKGLAD 796
>06_03_0806 + 24788441-24789049
Length = 202
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 371 SLIYYLMIVLKFTQISVYIMFIL*YFVYCDLL 466
S+IYYL I L +S+Y++ I+ +Y ++
Sbjct: 170 SIIYYLSIYLLSIYLSIYLLSIIYLSIYLSII 201
>03_06_0365 -
33399422-33399925,33400470-33400583,33400762-33400929,
33401305-33401547,33402148-33402231,33402323-33403098,
33404423-33404636
Length = 700
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 23 GTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQ 124
G + AFF N A+ L ++QEANQ + L+
Sbjct: 594 GLATAFFNEGNLSLARPLCELMQEANQEVPQWLE 627
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,665,095
Number of Sequences: 37544
Number of extensions: 167334
Number of successful extensions: 498
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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