Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_H04
         (529 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81555-7|CAB04518.1|  561|Caenorhabditis elegans Hypothetical pr...    46   1e-05
AC024859-14|AAY43989.1|  643|Caenorhabditis elegans Hypothetical...    28   4.8  

>Z81555-7|CAB04518.1|  561|Caenorhabditis elegans Hypothetical
           protein F58E10.3a protein.
          Length = 561

 Score = 46.4 bits (105), Expect = 1e-05
 Identities = 21/42 (50%), Positives = 29/42 (69%)
 Frame = +2

Query: 11  SKAKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMAD 136
           S  KGT+Y FFT +N+ +AKDL+ VL EA Q +   L+ MA+
Sbjct: 470 SDKKGTAYTFFTHTNASKAKDLLKVLDEAKQTVPQALRDMAN 511


>AC024859-14|AAY43989.1|  643|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.19 protein.
          Length = 643

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +2

Query: 23  GTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMA 133
           G + +FF   N   A++L+ ++ EANQ +   L+ M+
Sbjct: 525 GLATSFFNDKNRNIARELMDLIVEANQELPDWLEGMS 561


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,550,656
Number of Sequences: 27780
Number of extensions: 162112
Number of successful extensions: 391
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)