Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_H03
(576 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch... 27 2.0
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 27 2.6
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb... 26 3.4
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S... 26 4.5
SPCC970.11c |wtf9||wtf element, Wtf2, pseudo|Schizosaccharomyces... 26 4.5
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 25 6.0
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|... 25 6.0
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 25 7.9
SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces pombe... 25 7.9
>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 27.1 bits (57), Expect = 2.0
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = +1
Query: 262 LPLHTPIKINSTKSAN---IHNSLLHQKLWECNVSLRATIEGLMK 387
+P+H+ K T+ N IH LL K ++SLR I LMK
Sbjct: 758 IPIHSITKNQRTRLLNLLIIHEKLLSDKDNSAHISLRKIIYTLMK 802
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 26.6 bits (56), Expect = 2.6
Identities = 31/123 (25%), Positives = 50/123 (40%), Gaps = 2/123 (1%)
Frame = +1
Query: 193 AGEAPESDDETKLRSPVSYLEPDLPLHTPIKINSTKSANIHNSLLHQKLWECNVSLRATI 372
A E+ + + + VS + P+LP+H IN+ + N L + NV ++
Sbjct: 214 AEESVSTPPQPAVAPSVSAVVPNLPVHPATAINAQSQSG--NPLSNPLFQPSNVP-QSIP 270
Query: 373 EGLMKHTVDISVEKLTSADKTLLNVQESMRATNANL-SVARTRLQQLQAGLEKANCGAA- 546
G M SV S TL+NV S A + S+ + A + A G+
Sbjct: 271 SGPMGMKTG-SVNDTQSQQITLMNVLASQNVPPAQIDSIMKAAFPNYNAPFQPAGVGSVP 329
Query: 547 LPS 555
LP+
Sbjct: 330 LPA 332
>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1018
Score = 26.2 bits (55), Expect = 3.4
Identities = 17/77 (22%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Frame = +1
Query: 256 PDLPLHTPIKINSTKSANIHNSLLHQKLWECNVSLRATIEGLMKHTVDISV-EKLTSADK 432
P++ L PIK + +++ +SLL+ + R + ++ D+S E LTS+ +
Sbjct: 256 PEISLDEPIKALPSTTSDAPSSLLNTNVSSSPSKFRKFLSSVIPAKTDLSAKESLTSSTR 315
Query: 433 TLLNVQESMRATNANLS 483
+ + R++ S
Sbjct: 316 LSTSYKTRKRSSGVAFS 332
>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 25.8 bits (54), Expect = 4.5
Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 2/98 (2%)
Frame = +1
Query: 226 KLRSPVSYLEPDLPLHTPIKINSTKSANIHNSLLHQKLWECNVSLRATIEGLMK--HTVD 399
KL+ +S LE + + K S K S L +L + + L+K H
Sbjct: 352 KLKRRISELEMAVKEYESEKSYSEKEYEEKISSLRIELEDKLAEIDMLRNKLLKEEHKHH 411
Query: 400 ISVEKLTSADKTLLNVQESMRATNANLSVARTRLQQLQ 513
+ EKL K + ++Q+ R N + R+QQL+
Sbjct: 412 STSEKLEELSKYVASIQDKERNNGQNALELQARIQQLE 449
>SPCC970.11c |wtf9||wtf element, Wtf2, pseudo|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 333
Score = 25.8 bits (54), Expect = 4.5
Identities = 15/53 (28%), Positives = 22/53 (41%)
Frame = -2
Query: 512 CSCCSLVRATLRFAFVARILSCTFSKVLSALVSFSTDMSTVCFIRPSIVALRD 354
CS CS+ A L F R+ T + S L S V ++ ++ L D
Sbjct: 206 CSTCSISAALLLFLLYVRLPFWTLKHMFSGLFQVLGVQSCVVIVQKGLMHLFD 258
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 25.4 bits (53), Expect = 6.0
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -3
Query: 445 HLVKFYRHLSVSLLICPLCV 386
+LV F +HL+ L +CP C+
Sbjct: 71 YLVWFKKHLNERLQLCPKCI 90
>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
Mts4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 25.4 bits (53), Expect = 6.0
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -2
Query: 314 CMFALFVELIFIGVCSG 264
C+ AL + LIF+G C+G
Sbjct: 515 CLAALSLGLIFVGTCNG 531
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 25.0 bits (52), Expect = 7.9
Identities = 14/71 (19%), Positives = 31/71 (43%)
Frame = +1
Query: 280 IKINSTKSANIHNSLLHQKLWECNVSLRATIEGLMKHTVDISVEKLTSADKTLLNVQESM 459
+ + + + +HN LL+ KL +C V + M D+ +++ A L ++ +
Sbjct: 156 LDVANVVAETMHNYLLYGKLLQCKVIPEDQVHENMFKGADVPFKRIPHATIARLQHEKPL 215
Query: 460 RATNANLSVAR 492
A+ + R
Sbjct: 216 SKEKADKLITR 226
>SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 25.0 bits (52), Expect = 7.9
Identities = 15/53 (28%), Positives = 21/53 (39%)
Frame = -2
Query: 512 CSCCSLVRATLRFAFVARILSCTFSKVLSALVSFSTDMSTVCFIRPSIVALRD 354
CS CS+ A L F R+ T + S L S V + ++ L D
Sbjct: 184 CSTCSISAALLLFLLYVRLPFWTLKHMFSGLFQVLGVQSCVVIVTKGLMYLFD 236
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,195,003
Number of Sequences: 5004
Number of extensions: 41831
Number of successful extensions: 120
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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