Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_H03
         (576 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0553 + 4849535-4849553,4850727-4851913                           30   1.5  
09_02_0045 + 3479503-3480285                                           29   2.0  
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132     29   2.7  
08_02_0016 - 11262103-11262242,11262278-11262892,11263319-112633...    28   4.6  
06_01_0293 - 2139421-2139600,2139716-2140471,2140830-2140935,214...    27   8.1  

>05_01_0553 + 4849535-4849553,4850727-4851913
          Length = 401

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = +1

Query: 388 HTVDISVEKLTSADKTLLNVQESMRATNANLSVARTRLQQLQAGLEKA 531
           H +   + K    ++ L+ + +  + ++ANL VA  +LQ+   GL+KA
Sbjct: 311 HELKSELAKEREKNEALVQLYKQTKESHANLEVANAQLQERVDGLDKA 358


>09_02_0045 + 3479503-3480285
          Length = 260

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = +1

Query: 388 HTVDISVEKLTSADKTLLNVQESMRATNANLSVARTRLQQLQAGLEKA 531
           H +   + K    ++ L+ + +  + ++ANL VA  +LQ+   GL+KA
Sbjct: 119 HELKSELVKEREKNEALVRLYKQTKESHANLDVANAQLQERVDGLDKA 166


>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
          Length = 5436

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 19/58 (32%), Positives = 28/58 (48%)
 Frame = +1

Query: 280  IKINSTKSANIHNSLLHQKLWECNVSLRATIEGLMKHTVDISVEKLTSADKTLLNVQE 453
            IK+N  K  N HN+  H  + E NV L    E L+  T++    +L   D  L++  E
Sbjct: 1496 IKLNPLKDENNHNTFEHTYIIEGNVELHVKDEKLV--TLETEGSELEVMDTVLVSDAE 1551


>08_02_0016 -
           11262103-11262242,11262278-11262892,11263319-11263397,
           11263466-11263612
          Length = 326

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +1

Query: 376 GLMKHTVDISVEKLTSADKTLLNVQESMRATNANLSVARTRLQQLQAGLEKAN 534
           G M+  +   VEKL    + +  +QE + A +  L     RL Q+QA   +AN
Sbjct: 2   GEMEERLLAVVEKLAEKVEKVELIQEKLEAMDMKLEKQGERLDQVQAKANRAN 54


>06_01_0293 -
           2139421-2139600,2139716-2140471,2140830-2140935,
           2140999-2141249,2141342-2141443,2141557-2141876,
           2142350-2142546,2143668-2143786,2143876-2143997,
           2144877-2145081
          Length = 785

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
 Frame = -3

Query: 166 VGSNPGNGLFQFQFL-NQIL--MLPRQQHEPPLTWW 68
           +G+ P +G   ++F+ N  L  ML R+ + PPLTW+
Sbjct: 490 LGACPEHGCLVYEFMENGSLDDMLQRRNNTPPLTWF 525


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,150,381
Number of Sequences: 37544
Number of extensions: 261592
Number of successful extensions: 586
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)