Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_H03
(576 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75527-2|CAA99775.2| 636|Caenorhabditis elegans Hypothetical pr... 30 1.0
AF370361-1|AAK52514.1| 636|Caenorhabditis elegans putative tran... 30 1.0
AB096001-1|BAE53417.1| 676|Caenorhabditis elegans bHLH-PAS fact... 30 1.0
Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical pr... 29 3.1
AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein. 29 3.1
AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP ... 29 3.1
AF000191-3|AAB52882.1| 522|Caenorhabditis elegans Mediator prot... 28 4.1
U88172-4|AAB42259.1| 224|Caenorhabditis elegans Hypothetical pr... 28 5.5
U39649-3|AAM69070.1| 1538|Caenorhabditis elegans Hypothetical pr... 27 7.2
U39649-2|AAM69069.1| 1534|Caenorhabditis elegans Hypothetical pr... 27 7.2
AL022275-1|CAA18360.2| 220|Caenorhabditis elegans Hypothetical ... 27 9.5
AF026202-1|AAZ82858.1| 755|Caenorhabditis elegans Histone deace... 27 9.5
>Z75527-2|CAA99775.2| 636|Caenorhabditis elegans Hypothetical
protein C15C8.2 protein.
Length = 636
Score = 30.3 bits (65), Expect = 1.0
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Frame = +1
Query: 190 IAGEAPESD-DETKLRSPVSYLEPDLPLHTPIKINSTKSANIHNSLL-HQKLWECNVSLR 363
IA P D ++ K+ P+ + +PL TP + SA++H SLL H + ++
Sbjct: 476 IAPGFPSLDYNQIKVEIPMRPINTQIPLFTPESSSPESSASLHTSLLPHHNAFPLDI--- 532
Query: 364 ATIEGLMKHTVDISVEKLTSADKTLLNVQESMRATNAN 477
+E ++ D+ E D+ L V++S + A+
Sbjct: 533 --LEDILPSN-DVLPELKDEVDEILRQVEQSPATSPAH 567
>AF370361-1|AAK52514.1| 636|Caenorhabditis elegans putative
transcription factor C15C8.2protein.
Length = 636
Score = 30.3 bits (65), Expect = 1.0
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Frame = +1
Query: 190 IAGEAPESD-DETKLRSPVSYLEPDLPLHTPIKINSTKSANIHNSLL-HQKLWECNVSLR 363
IA P D ++ K+ P+ + +PL TP + SA++H SLL H + ++
Sbjct: 476 IAPGFPSLDYNQIKVEIPMRPINTQIPLFTPESSSPESSASLHTSLLPHHNAFPLDI--- 532
Query: 364 ATIEGLMKHTVDISVEKLTSADKTLLNVQESMRATNAN 477
+E ++ D+ E D+ L V++S + A+
Sbjct: 533 --LEDILPSN-DVLPELKDEVDEILRQVEQSPATSPAH 567
>AB096001-1|BAE53417.1| 676|Caenorhabditis elegans bHLH-PAS factor
protein.
Length = 676
Score = 30.3 bits (65), Expect = 1.0
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Frame = +1
Query: 190 IAGEAPESD-DETKLRSPVSYLEPDLPLHTPIKINSTKSANIHNSLL-HQKLWECNVSLR 363
IA P D ++ K+ P+ + +PL TP + SA++H SLL H + ++
Sbjct: 476 IAPGFPSLDYNQIKVEIPMRPINTQIPLFTPESSSPESSASLHTSLLPHHNAFPLDI--- 532
Query: 364 ATIEGLMKHTVDISVEKLTSADKTLLNVQESMRATNAN 477
+E ++ D+ E D+ L V++S + A+
Sbjct: 533 --LEDILPSN-DVLPELKDEVDEILRQVEQSPATSPAH 567
>Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical
protein C05C12.3 protein.
Length = 1694
Score = 28.7 bits (61), Expect = 3.1
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +3
Query: 276 SDKN*FNKKCKHTQFFTSSEIMGMQCIS*SDN*GSNETHSGHISRETDKCR*NFTKC 446
SDK N +H Q F +++ + IS S +HSGH +R N+ +C
Sbjct: 52 SDKAPLNSAPRHVQKFDWKDMLHLADISGRKRGNSTTSHSGHATRAGSLKGKNWIEC 108
>AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.
Length = 1694
Score = 28.7 bits (61), Expect = 3.1
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +3
Query: 276 SDKN*FNKKCKHTQFFTSSEIMGMQCIS*SDN*GSNETHSGHISRETDKCR*NFTKC 446
SDK N +H Q F +++ + IS S +HSGH +R N+ +C
Sbjct: 52 SDKAPLNSAPRHVQKFDWKDMLHLADISGRKRGNSTTSHSGHATRAGSLKGKNWIEC 108
>AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP
homologous cationchannel protein.
Length = 1681
Score = 28.7 bits (61), Expect = 3.1
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +3
Query: 276 SDKN*FNKKCKHTQFFTSSEIMGMQCIS*SDN*GSNETHSGHISRETDKCR*NFTKC 446
SDK N +H Q F +++ + IS S +HSGH +R N+ +C
Sbjct: 39 SDKAPLNSAPRHVQKFDWKDMLHLADISGRKRGNSTTSHSGHATRAGSLKGKNWIEC 95
>AF000191-3|AAB52882.1| 522|Caenorhabditis elegans Mediator protein
1.2 protein.
Length = 522
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 304 ANIHNSLLHQKLWECNVSLRATIEGLMKHTV 396
A + N +H LWE +S +G+ KHTV
Sbjct: 382 AILRNEAMHISLWESMISACYEKQGMKKHTV 412
>U88172-4|AAB42259.1| 224|Caenorhabditis elegans Hypothetical
protein ZK354.7 protein.
Length = 224
Score = 27.9 bits (59), Expect = 5.5
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +1
Query: 211 SDDETKLRSPVSYLEPDLPLHTPIKINSTKSANIHN 318
S+D K+++PV Y++PD + P+ N K+ +N
Sbjct: 60 SNDLFKIKTPVGYIKPDETIDIPLCHNPGKAIPENN 95
>U39649-3|AAM69070.1| 1538|Caenorhabditis elegans Hypothetical
protein T23F2.2b protein.
Length = 1538
Score = 27.5 bits (58), Expect = 7.2
Identities = 18/82 (21%), Positives = 38/82 (46%)
Frame = +1
Query: 289 NSTKSANIHNSLLHQKLWECNVSLRATIEGLMKHTVDISVEKLTSADKTLLNVQESMRAT 468
++ + A+ HN + + +CN A + LMK+ ++ + + A + ++E
Sbjct: 456 HTNREADPHNDPI--VITDCNFEACAETKNLMKNEIESLRQTFSDAKIRIRELEEDANIF 513
Query: 469 NANLSVARTRLQQLQAGLEKAN 534
+L A +L A L++AN
Sbjct: 514 RKDLEKADDDRLKLDAALKEAN 535
>U39649-2|AAM69069.1| 1534|Caenorhabditis elegans Hypothetical
protein T23F2.2a protein.
Length = 1534
Score = 27.5 bits (58), Expect = 7.2
Identities = 18/82 (21%), Positives = 38/82 (46%)
Frame = +1
Query: 289 NSTKSANIHNSLLHQKLWECNVSLRATIEGLMKHTVDISVEKLTSADKTLLNVQESMRAT 468
++ + A+ HN + + +CN A + LMK+ ++ + + A + ++E
Sbjct: 456 HTNREADPHNDPI--VITDCNFEACAETKNLMKNEIESLRQTFSDAKIRIRELEEDANIF 513
Query: 469 NANLSVARTRLQQLQAGLEKAN 534
+L A +L A L++AN
Sbjct: 514 RKDLEKADDDRLKLDAALKEAN 535
>AL022275-1|CAA18360.2| 220|Caenorhabditis elegans Hypothetical
protein W06B3.1 protein.
Length = 220
Score = 27.1 bits (57), Expect = 9.5
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Frame = +1
Query: 229 LRSPVS--YLEPDLPLHTPIKINSTKSANIHNSLLHQKLWECNVS-LRATIEGLMKHTVD 399
+ SPVS Y + L + ++ T++A + +H WEC S AT+ L H D
Sbjct: 43 IMSPVSDGYAKKSL-ISAKHRLAQTEAATYDSDWIHASGWECAQSEWTATVNVLKHHQQD 101
Query: 400 ISVEKLTSADKTLL 441
+ KL S LL
Sbjct: 102 VK-NKLGSDVNVLL 114
>AF026202-1|AAZ82858.1| 755|Caenorhabditis elegans Histone
deacetylase protein 4 protein.
Length = 755
Score = 27.1 bits (57), Expect = 9.5
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = +1
Query: 154 DSNLQSNSRSFVIAGEAPESDDETKLRSPVSYLEPDLPLHTPIKINSTKSANIHN 318
+SN QSN S + D+ KL++ S + P P ++ T AN HN
Sbjct: 70 ESNSQSNLMSNSVTANGNGHDNGRKLKNSNSQVNVSSPHFEPYRL-PTSLANAHN 123
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,410,651
Number of Sequences: 27780
Number of extensions: 244617
Number of successful extensions: 637
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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