Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_H02
(507 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 248 5e-67
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 159 2e-40
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 152 3e-38
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 123 2e-29
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c... 27 1.6
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 27 2.1
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual 26 2.8
SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr 3|||Ma... 26 2.8
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c... 26 3.7
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 26 3.7
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz... 26 3.7
SPAC11D3.10 |||nifs homolog|Schizosaccharomyces pombe|chr 1|||Ma... 26 3.7
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 4.9
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 25 4.9
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 25 6.5
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei... 25 8.6
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 25 8.6
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 248 bits (606), Expect = 5e-67
Identities = 113/166 (68%), Positives = 131/166 (78%)
Frame = +1
Query: 10 VPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV 189
VPRA+LVDLEPGTMD+V+SG FG +FRPDN ++GQSGAGN WAKGHYTEGAEL D+VLDV
Sbjct: 60 VPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDV 119
Query: 190 VRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTV 369
VR+EAE+CD LQGFQ KIREEYPDR+M T+SV P+PK SDTV
Sbjct: 120 VRREAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATFSVAPAPKSSDTV 179
Query: 370 VEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDL 507
VEPYNATLS+HQLVEN+DET+CIDNEAL I TLK+ +P+Y DL
Sbjct: 180 VEPYNATLSMHQLVENSDETFCIDNEALSSIFANTLKIKSPSYDDL 225
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 159 bits (387), Expect = 2e-40
Identities = 72/166 (43%), Positives = 104/166 (62%)
Frame = +1
Query: 10 VPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV 189
VPR+I VDLEP +D VR+GP+ +F P+ V G+ A NN+A+GHYT G E++DSVL+
Sbjct: 66 VPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMIDSVLER 125
Query: 190 VRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTV 369
+R+ A++C LQGF ++ EY + +SV P+P+VS +V
Sbjct: 126 IRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGKKSNLQFSVYPAPQVSTSV 185
Query: 370 VEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDL 507
VEPYN+ L+ H ++N+D T+ +DNEA YDIC R L + PTY +L
Sbjct: 186 VEPYNSVLTTHATLDNSDCTFMVDNEACYDICRRNLDIERPTYENL 231
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 152 bits (368), Expect = 3e-38
Identities = 69/166 (41%), Positives = 100/166 (60%)
Frame = +1
Query: 10 VPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV 189
VPR+I VDLEP +D VR+GP+ +F P+ + G+ A NN+A+GHYT G ELVD V D
Sbjct: 62 VPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTDK 121
Query: 190 VRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTV 369
+R+ A++C LQGF ++ EY + +SV P+P+VS +V
Sbjct: 122 IRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEYTKKSKLQFSVYPAPQVSTSV 181
Query: 370 VEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDL 507
VEPYN+ L+ H ++ D T+ +DNE+ YDIC R L + P+Y +L
Sbjct: 182 VEPYNSVLTTHATLDLADCTFMVDNESCYDICRRNLDIERPSYENL 227
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 123 bits (296), Expect = 2e-29
Identities = 59/168 (35%), Positives = 94/168 (55%), Gaps = 3/168 (1%)
Frame = +1
Query: 4 RGVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSG--AGNNWAKGHYTEGAELVDS 177
R +PRAIL+DLEP ++++ S +G ++ P+N + ++G AGNNWA G Y+ + +
Sbjct: 59 RYIPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFED 117
Query: 178 VLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVP-SPK 354
++D++ +EA+ D L+GF ++ + YP +I+ TYSV P S
Sbjct: 118 IMDMIDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQTYSVFPNSQS 177
Query: 355 VSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTY 498
VSD VV+PYN+ L++ +L N D +DN AL I L PT+
Sbjct: 178 VSDVVVQPYNSLLALKRLTLNADSVVVLDNAALAHIAADRLHTQNPTF 225
>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 577
Score = 27.1 bits (57), Expect = 1.6
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = +2
Query: 218 VYKD-SNSHTPSEAVLAPVWAPFSSLKY 298
VYK S HT S L +W PFS L Y
Sbjct: 238 VYKTISPLHTQSTDKLYTIWTPFSELHY 265
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 26.6 bits (56), Expect = 2.1
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 67 GPFGQIFRPDNFVFGQSGAG-NNWAKGHYTEGAEL 168
GP+G +F P F+F +G NW+ Y E A L
Sbjct: 157 GPYGTMFLPQQFIFDSNGRPLLNWSY-LYKEHAHL 190
>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 26.2 bits (55), Expect = 2.8
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 136 AKGHYTEGAELVDSVLDVVRKEAESCDCLQ 225
A+GH G ELV + D +RK++E+ L+
Sbjct: 183 AEGHPDVGVELVRAGADTLRKDSENHTALE 212
>SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr
3|||Manual
Length = 396
Score = 26.2 bits (55), Expect = 2.8
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -3
Query: 481 VSACGSRCHRGLHC 440
VSAC CH+GL C
Sbjct: 210 VSACAFACHKGLSC 223
>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 807
Score = 25.8 bits (54), Expect = 3.7
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -2
Query: 209 DSASLRTTSKTESTSSAPSV*CPLAQLLPAPDCPKTKLSGRKICPK 72
++A+ RTTS T+ +PS L P P + S R+ CPK
Sbjct: 390 NAAADRTTSPTQGQPESPS---KSILLRPPPSIASSPESKRRKCPK 432
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 25.8 bits (54), Expect = 3.7
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = +1
Query: 88 RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDC 219
RP +F G++ G + E D ++ + + ESCDC
Sbjct: 955 RPSRLIF-YDNCGDSSGAGLCNKAYEHTDELITMAIERIESCDC 997
>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 255
Score = 25.8 bits (54), Expect = 3.7
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -2
Query: 125 PAPDCPKTKLSGRKICPKGPERTESMVPGSRS 30
P+ PK L R I P GPE + + GS S
Sbjct: 20 PSTPPPKEVLHTRVIVPNGPEEIKLRLVGSHS 51
>SPAC11D3.10 |||nifs homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 434
Score = 25.8 bits (54), Expect = 3.7
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -3
Query: 481 VSACGSRCHRGLHC 440
VSAC CH+GL C
Sbjct: 207 VSACAFSCHKGLGC 220
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 4.9
Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 3/98 (3%)
Frame = +2
Query: 71 PSDRSSAPTTSFSDSPAPVTTGLRD---TTRKVLS*SIPS*T*FARKQSHVIVYKDSNSH 241
PS S + TTS S S + ++ + T+ L+ S S + A SH S
Sbjct: 350 PSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSSSHSSSLSSHKSS 409
Query: 242 TPSEAVLAPVWAPFSSLKYEKNTPTES*THTLLYLHLK 355
+ S++ APV + F + + S +H+L L K
Sbjct: 410 SSSKSSSAPVSSAFYHNSTSSRSSSHSSSHSLSSLSSK 447
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 25.4 bits (53), Expect = 4.9
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -3
Query: 421 LCFLLTDVPKVWH 383
L FLLTD+ K+WH
Sbjct: 661 LRFLLTDLTKIWH 673
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 25.0 bits (52), Expect = 6.5
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = -2
Query: 233 WNPCKQSHDSASLRTTSKT----ESTSSAPSV*CPLAQLLPAPDCPKTKLSG 90
++P +S D+ S RT S + TSS PS AQLL P K +G
Sbjct: 355 FSPSYRSSDTHSPRTRSPNVQTHKKTSSQPSDLSSFAQLLSPPQVLSPKPNG 406
>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1462
Score = 24.6 bits (51), Expect = 8.6
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +1
Query: 379 YNATLSVHQLVENTDETYCI 438
+N L+V+ +V N DET+ I
Sbjct: 1419 FNVCLAVNTIVNNVDETFSI 1438
>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1066
Score = 24.6 bits (51), Expect = 8.6
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 65 RDPSDRSSAPTTSFSDSPAPVTTGLRDT 148
+DPSD S+PT S +P+ T L+ T
Sbjct: 19 QDPSDAQSSPTFVPSANPSLTTPWLQTT 46
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.136 0.410
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,042,466
Number of Sequences: 5004
Number of extensions: 41272
Number of successful extensions: 143
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
- SilkBase 1999-2023 -