Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_G24
(625 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz... 265 4e-72
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz... 264 7e-72
SPAC19D5.05c |||U3 snoRNP-associated protein Imp3 |Schizosacchar... 43 4e-05
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c... 31 0.10
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe... 29 0.72
SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1||... 27 1.7
SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated |Schizosaccharom... 27 2.9
SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase Met... 27 2.9
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 26 3.8
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom... 26 5.1
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar... 25 6.7
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo... 25 8.9
SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces pomb... 25 8.9
>SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein
S9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 192
Score = 265 bits (649), Expect = 4e-72
Identities = 129/188 (68%), Positives = 146/188 (77%), Gaps = 1/188 (0%)
Frame = +1
Query: 55 PSVFSKTYVTPHS-VEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 231
P SKTY P E ARLD ELK+ GEYGLRNK E+WRV TL++IR+AARELLTL+E
Sbjct: 5 PRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDE 64
Query: 232 KDPKRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHH 411
KDPKRLFEGNA DE +MKLDYVL L+IEDFLERRLQTQVFK GLAKSIHH
Sbjct: 65 KDPKRLFEGNAIIRRLVRLGILDESRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHH 124
Query: 412 ARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQGGG 591
AR+LI QRHIRV KQ+VN+PSF+VRLD+ KHIDF+L SP+GGGRPGR KRK LR Q GG
Sbjct: 125 ARVLIFQRHIRVGKQIVNVPSFVVRLDAQKHIDFALSSPYGGGRPGRCKRKRLRSQQEGG 184
Query: 592 ATNDEEED 615
+ EE+
Sbjct: 185 EGEEAEEE 192
>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
S9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 191
Score = 264 bits (647), Expect = 7e-72
Identities = 129/187 (68%), Positives = 145/187 (77%), Gaps = 1/187 (0%)
Frame = +1
Query: 55 PSVFSKTYVTPHS-VEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 231
P SKTY P E ARLD ELK+ GEYGLRNK E+WRV TL++IR+AARELLTL+E
Sbjct: 5 PRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDE 64
Query: 232 KDPKRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHH 411
KDPKRLFEGNA DE +MKLDYVL L+IEDFLERRLQTQVFK GLAKSIHH
Sbjct: 65 KDPKRLFEGNAIIRRLVRLGILDETRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHH 124
Query: 412 ARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQGGG 591
AR+LI QRHIRV KQ+VN+PSF+VRLD+ KHIDF+L SP+GGGRPGR KRK LR +GG
Sbjct: 125 ARVLIFQRHIRVGKQIVNVPSFVVRLDTQKHIDFALSSPYGGGRPGRCKRKRLRSQEGGE 184
Query: 592 ATNDEEE 612
EEE
Sbjct: 185 GEEAEEE 191
>SPAC19D5.05c |||U3 snoRNP-associated protein Imp3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 183
Score = 42.7 bits (96), Expect = 4e-05
Identities = 27/123 (21%), Positives = 49/123 (39%)
Frame = +1
Query: 115 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNAXXXXXXXXXX 294
+++ ++ Y + + E + + R+ A L L+ DP RL N
Sbjct: 28 RDVMVMRRYHISKREEYQKYNIICGKFRQLAHRLSLLDPTDPFRLQYENLLLEKLFDMGI 87
Query: 295 XDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPS 474
K D + RRL + K +++ + A LI Q H+RV V+ P+
Sbjct: 88 LPSKSKMSDIENKANVSAICRRRLPVIMCKLRMSQVVSEATRLIEQGHVRVGPHVITDPA 147
Query: 475 FIV 483
++V
Sbjct: 148 YLV 150
>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 554
Score = 31.5 bits (68), Expect = 0.10
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -2
Query: 117 LIKTRLLDGVRSYVCFGKYRWYLLF 43
L K+R+L + + FG+Y+WYL F
Sbjct: 59 LAKSRILSNAMNEIGFGRYQWYLFF 83
>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 527
Score = 28.7 bits (61), Expect = 0.72
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = -2
Query: 264 SIAFKQSLRILLLECQQFTGSLTDASERVLDAPHFTLVAETIL 136
SI F+ S RIL Q T LT S + HF ++ TIL
Sbjct: 18 SIFFQGSSRILTFFLNQLTIRLTSPSAYAFSSIHFEILQSTIL 60
>SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 393
Score = 27.5 bits (58), Expect = 1.7
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
Frame = -2
Query: 366 KTALQEVLNLQTEHI-IQFHLFLIKHSDPNQTT**SIAFKQSLRILLLECQQFTGSLTDA 190
KT++ E+ N H+ +F ++K + Q QSL E FT SL
Sbjct: 187 KTSILEICNEMYVHLRTRFECRVMKKKNRTQWINIDEHLSQSLHATDTETHTFTDSLVVL 246
Query: 189 SERVLDAPHFTLVAETILSDDLQLLIKTRLLDGV 88
+E V+D T +++ +L D + L + DG+
Sbjct: 247 NEVVIDRGPNTAMSDIMLYVDSKYLTTVK-ADGL 279
>SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 26.6 bits (56), Expect = 2.9
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +1
Query: 310 MKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHI 441
+++D L + +E FL++ TQ+ +A I + I Q H+
Sbjct: 132 VRMDGALWMAVEQFLQQEFDTQILPCLIAPEILLEFLKIWQNHV 175
>SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase
Met11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 641
Score = 26.6 bits (56), Expect = 2.9
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +1
Query: 76 YVTPHSVEKARLDQELKIIGEYGLRN 153
++T +V+KA +D+ L+ EYG+RN
Sbjct: 81 HLTCTNVDKAIIDKALETAKEYGIRN 106
>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 841
Score = 26.2 bits (55), Expect = 3.8
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -1
Query: 91 SEELRMFWKIPMVPVVHH 38
+E+L+ FW+I +P HH
Sbjct: 168 AEKLQYFWEIHAIPAYHH 185
>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 703
Score = 25.8 bits (54), Expect = 5.1
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = -1
Query: 364 DGAPRSPQSSNRAHNPVSSVSHQALRP 284
DGA S Q+ AHNP +SVS + +RP
Sbjct: 90 DGA--SSQNDAFAHNPSTSVSVELVRP 114
>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 25.4 bits (53), Expect = 6.7
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +3
Query: 399 VNPSCPHLDQTEAYSCPQAGGEHSFVHRPPGLRQAH*LLSEVAVRRRPARSRQEEEPA 572
V+ + P +++ + P GG HS + RP R + LLS A + + E+P+
Sbjct: 113 VSVNAPIVNEV-SLQAPMKGGSHSSIVRPQAKRSSSRLLSTDAFSQFISSFSPPEKPS 169
>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
Aah4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 774
Score = 25.0 bits (52), Expect = 8.9
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 150 AETILSDDLQLLIKTRLLDGVRSYVCFGKYRWY 52
A+ L D +Q ++T +DG+R KYR Y
Sbjct: 438 AKGALEDYIQTFVETFQIDGIRFDAMGDKYRKY 470
>SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 401
Score = 25.0 bits (52), Expect = 8.9
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +3
Query: 372 SGVQGWSCEVNPSCP 416
+G++GWS EV+P+ P
Sbjct: 385 AGLKGWSTEVDPNFP 399
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,265,053
Number of Sequences: 5004
Number of extensions: 44956
Number of successful extensions: 156
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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