Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_G24
(625 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192 245 3e-65
11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511 244 6e-65
03_01_0382 + 2961665-2961672,2962504-2962557,2962935-2963004,296... 241 3e-64
03_03_0147 + 14838707-14838734,14839316-14839430,14839464-148396... 117 9e-27
07_03_1357 - 25982861-25983068,25983354-25983361 74 1e-13
07_03_1358 - 25984897-25984997,25985623-25985650 33 0.14
04_04_1470 - 33818394-33818625,33819636-33819743,33819895-33820028 32 0.32
12_02_0441 + 19115990-19116478 31 0.74
01_07_0290 - 42542201-42542359,42542443-42542551,42542729-425435... 30 1.3
07_03_0366 + 17321948-17322331 29 2.3
02_05_1008 - 33461225-33462334 29 3.0
10_06_0085 + 10511258-10512327,10512978-10513058,10513318-105133... 29 4.0
10_02_0155 + 5937974-5939419,5939678-5939867,5940895-5941022 28 5.2
03_02_0167 - 6088818-6089870 28 5.2
01_06_0939 - 33188620-33189252,33189570-33189680,33190460-331906... 28 5.2
01_05_0369 - 21468204-21468595,21471417-21471606,21471680-214718... 28 6.9
>11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192
Length = 195
Score = 245 bits (599), Expect = 3e-65
Identities = 117/185 (63%), Positives = 142/185 (76%), Gaps = 1/185 (0%)
Frame = +1
Query: 64 FSKTYVTPHS-VEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 240
+ KT+ P EK RLD ELK++GEYGLR KRE+WRV+Y L+RIR AR LLTL+EK+P
Sbjct: 10 YGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARHLLTLDEKNP 69
Query: 241 KRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARI 420
+R+FEG A + Q KLDYVL L +E+FL RRLQT VFKAG+AKSIHHAR+
Sbjct: 70 RRIFEGEALLRRMNRYGLLADGQNKLDYVLALTVENFLARRLQTLVFKAGMAKSIHHARV 129
Query: 421 LIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQGGGATN 600
LIRQRHIRV +Q+VNIPSF+VR++S KHIDFSL SPFGGG PGRVKRKN +K GGG
Sbjct: 130 LIRQRHIRVGRQIVNIPSFMVRVESEKHIDFSLTSPFGGGPPGRVKRKNQKKASGGGGDG 189
Query: 601 DEEED 615
+EE++
Sbjct: 190 EEEDE 194
>11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511
Length = 218
Score = 244 bits (596), Expect = 6e-65
Identities = 117/183 (63%), Positives = 141/183 (77%), Gaps = 1/183 (0%)
Frame = +1
Query: 70 KTYVTPHS-VEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKR 246
KT+ P EK RLD ELK++GEYGLR KRE+WRV+Y L+RIR AR LLTL+EK+P+R
Sbjct: 35 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARHLLTLDEKNPRR 94
Query: 247 LFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILI 426
+FEG A + Q KLDYVL L +E+FL RRLQT VFKAG+AKSIHHAR+LI
Sbjct: 95 IFEGEALLRRMNRYGLLADGQNKLDYVLALTVENFLARRLQTLVFKAGMAKSIHHARVLI 154
Query: 427 RQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQGGGATNDE 606
RQRHIRV +Q+VNIPSF+VR++S KHIDFSL SPFGGG PGRVKRKN +K GGG +E
Sbjct: 155 RQRHIRVGRQIVNIPSFMVRVESEKHIDFSLTSPFGGGPPGRVKRKNQKKASGGGGDGEE 214
Query: 607 EED 615
E++
Sbjct: 215 EDE 217
>03_01_0382 +
2961665-2961672,2962504-2962557,2962935-2963004,
2963141-2963386,2967246-2967491,2968837-2968888,
2969270-2969651,2970527-2970681,2971389-2971713,
2975803-2975871,2976189-2976346,2976444-2976551,
2976659-2977131
Length = 781
Score = 241 bits (590), Expect = 3e-64
Identities = 117/189 (61%), Positives = 142/189 (75%), Gaps = 1/189 (0%)
Frame = +1
Query: 28 ARQDGEQQVPSVFSKTYVTPHS-VEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKA 204
A +D ++ + KT+ P EK RLD ELK++GEYGLR KRE+WRV+Y L+RIR
Sbjct: 214 ATRDNTAKLNLAYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNN 273
Query: 205 ARELLTLEEKDPKRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFK 384
AR LLTL+EK+P+R+FEG A + Q KLDYVL L +E+FL RRLQT VFK
Sbjct: 274 ARHLLTLDEKNPRRIFEGEALLRRMNRYGLLADGQNKLDYVLALTVENFLARRLQTLVFK 333
Query: 385 AGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRK 564
AG+AKSIHHAR+LIRQRHIRV +Q+VNIPSF+VR++S KHIDFSL SPFGGG PGRVKRK
Sbjct: 334 AGMAKSIHHARVLIRQRHIRVGRQIVNIPSFMVRVESEKHIDFSLTSPFGGGPPGRVKRK 393
Query: 565 NLRKGQGGG 591
N +K GGG
Sbjct: 394 NQKKASGGG 402
>03_03_0147 +
14838707-14838734,14839316-14839430,14839464-14839697,
14840571-14840667
Length = 157
Score = 117 bits (281), Expect = 9e-27
Identities = 65/127 (51%), Positives = 79/127 (62%), Gaps = 1/127 (0%)
Frame = +1
Query: 64 FSKTYVTPHS-VEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 240
+ KT+ P EK R D ELK+ GEYGLR+K E+WRV+ ELLTL+EK+P
Sbjct: 10 YGKTFKKPRRPYEKERPDAELKLYGEYGLRSKCELWRVQ-----------ELLTLDEKNP 58
Query: 241 KRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARI 420
+R+FEG A E Q KLDYVL L +E+FL+ RLQT VFK G KSIHH +
Sbjct: 59 RRIFEGEALLRHMNRYGLLGEGQNKLDYVLALTVENFLQCRLQTIVFKNGTVKSIHHDHV 118
Query: 421 LIRQRHI 441
LIRQ HI
Sbjct: 119 LIRQHHI 125
>07_03_1357 - 25982861-25983068,25983354-25983361
Length = 71
Score = 73.7 bits (173), Expect = 1e-13
Identities = 37/58 (63%), Positives = 43/58 (74%)
Frame = +1
Query: 442 RVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQGGGATNDEEED 615
RV +Q+VNIPSFIVRL+S KHI FSL SP GG RVKRKN +K GGG +EEE+
Sbjct: 3 RVGRQLVNIPSFIVRLESEKHIAFSLTSPLGGSPAVRVKRKN-QKASGGGGDGEEEEE 59
>07_03_1358 - 25984897-25984997,25985623-25985650
Length = 42
Score = 33.5 bits (73), Expect = 0.14
Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +1
Query: 64 FSKTYVTPHS-VEKARLDQELKIIGEYG 144
+ KT+ P EK RLD ELK++GEYG
Sbjct: 10 YGKTFKKPRRPYEKERLDAELKLVGEYG 37
>04_04_1470 - 33818394-33818625,33819636-33819743,33819895-33820028
Length = 157
Score = 32.3 bits (70), Expect = 0.32
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +1
Query: 358 RRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 483
RRL T + K A+ + A I+Q H+RV + V P+F+V
Sbjct: 82 RRLATVMVKLKFAEHLKEAVTYIQQGHVRVGPETVTDPAFLV 123
>12_02_0441 + 19115990-19116478
Length = 162
Score = 31.1 bits (67), Expect = 0.74
Identities = 20/50 (40%), Positives = 30/50 (60%)
Frame = +1
Query: 466 IPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQGGGATNDEEED 615
+ +F++RL K I K+ GGG GR K+ KG+GGG ++EEE+
Sbjct: 108 VKTFVIRLVE-KVIGLE-KNGRGGGGGGRKKK---GKGKGGGGEDEEEEE 152
>01_07_0290 - 42542201-42542359,42542443-42542551,42542729-42543516,
42543601-42543744,42543840-42544013,42544056-42544369,
42544467-42544636,42544916-42545043,42545125-42545185,
42545473-42545642,42545783-42547387,42547479-42547631,
42547747-42547905,42548066-42548236,42548357-42548404,
42548509-42548624,42548885-42549029,42549122-42549220
Length = 1570
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 532 GGGRPGRVKRKNLRKGQGGG 591
G RPG RKN +GQGGG
Sbjct: 1369 GSSRPGEWNRKNNNRGQGGG 1388
>07_03_0366 + 17321948-17322331
Length = 127
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 496 GKHIDFSLKSPFGGGRPGRVKRKNLRKGQGGGATNDE 606
G ++ +S GGG R +R+ R+G GGGA E
Sbjct: 32 GDTVEAERQSRHGGGGRRRRQRRGRRRGSGGGAMEAE 68
>02_05_1008 - 33461225-33462334
Length = 369
Score = 29.1 bits (62), Expect = 3.0
Identities = 24/81 (29%), Positives = 44/81 (54%)
Frame = +1
Query: 301 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 480
E Q+ L+Y+ G +E RR+ ++ F A +A+ + + +RHI V + + PS +
Sbjct: 163 ELQILLEYMDGGSLEG---RRIASEAFLADVARQVLSGIAYLHRRHI-VHRDIK--PSNL 216
Query: 481 VRLDSGKHIDFSLKSPFGGGR 543
+ +DSG+ + + FG GR
Sbjct: 217 L-IDSGRRVKI---ADFGVGR 233
>10_06_0085 +
10511258-10512327,10512978-10513058,10513318-10513396,
10514160-10514201
Length = 423
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +1
Query: 340 IEDFLERRLQTQVFKAGLAKSIHHAR 417
+ED+ E L T F A L KS+H AR
Sbjct: 110 VEDYFEGSLHTLDFLAALDKSLHRAR 135
>10_02_0155 + 5937974-5939419,5939678-5939867,5940895-5941022
Length = 587
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 372 SGVQGWSCEVNPSCPHLDQTEAY 440
+GV WS VNPS +L TEA+
Sbjct: 107 AGVSTWSLRVNPSSGNLHPTEAH 129
>03_02_0167 - 6088818-6089870
Length = 350
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 520 KSPFGGGRPGRVKRKNLRKGQGGGATNDEEED 615
K P GGG GR + G+ GG ++EEED
Sbjct: 103 KLPAGGGHRGR----QVLSGRSGGGVDEEEED 130
>01_06_0939 -
33188620-33189252,33189570-33189680,33190460-33190668,
33190781-33191078
Length = 416
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +1
Query: 115 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKD 237
Q L+ I G+ + +E++ + +L RIR R LT+E D
Sbjct: 212 QRLQTIHLLGIDDNQEIFTTQTSLTRIRAVPRYSLTIESLD 252
>01_05_0369 -
21468204-21468595,21471417-21471606,21471680-21471867,
21484028-21484580
Length = 440
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +1
Query: 535 GGRPGRVKRKNLRKGQGGGATNDEEE 612
GGRP + K + G+GG T DEEE
Sbjct: 169 GGRPAPEREKE-KAGRGGPLTGDEEE 193
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,082,231
Number of Sequences: 37544
Number of extensions: 354671
Number of successful extensions: 1305
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1296
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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