Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_G23
         (433 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0535 - 16850704-16853001,16854055-16854115,16854228-168543...    35   0.032
04_03_0289 + 13972020-13972077,13972444-13973301,13973850-139742...    27   6.5  

>04_03_0535 - 16850704-16853001,16854055-16854115,16854228-16854323,
            16854394-16854521,16855016-16855067,16855182-16855274,
            16855473-16855590,16856456-16856609,16857512-16857643,
            16859136-16859216,16859353-16859507,16860118-16860343,
            16860423-16860507,16860593-16860689,16861785-16861949,
            16862046-16862121,16863041-16863103,16863193-16863359,
            16863495-16863669,16863743-16863835,16864694-16864810,
            16865589-16865778,16866092-16866126
          Length = 1618

 Score = 34.7 bits (76), Expect = 0.032
 Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
 Frame = -1

Query: 214  QLNCRLRSITSKKHPATSNV-IKDRIYADLV--CFQPKKKDFFYLLADRLSEIKY 59
            ++  RLRSI +KK P  S + +KD ++  LV     P++++ + +L D +S I Y
Sbjct: 1535 KVRTRLRSINAKKEPGCSWIEVKDMVHVFLVEDRNHPEREEIYLMLEDLVSNISY 1589


>04_03_0289 +
           13972020-13972077,13972444-13973301,13973850-13974235,
           13974249-13974323,13975824-13976139,13976284-13977113
          Length = 840

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +3

Query: 99  KSFFLGWKHTKSAYIRSLITLEVAGCFFEVILLRRQFNCWVR 224
           K + + WK    ++      L + GC F++ LL +  N  VR
Sbjct: 130 KDYNMSWKAPGRSFTLDNALLNITGCDFDIYLLDQDRNSAVR 171


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,619,990
Number of Sequences: 37544
Number of extensions: 200373
Number of successful extensions: 306
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 306
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)