Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_G23
         (433 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039051-8|AAB94268.3|  309|Caenorhabditis elegans Serpentine re...    29   1.9  
AF039051-7|AAB94267.2|  304|Caenorhabditis elegans Serpentine re...    29   1.9  
AC024799-6|AAK72315.1|  306|Caenorhabditis elegans Serpentine re...    27   4.4  
Z83238-4|CAB05795.1|  341|Caenorhabditis elegans Hypothetical pr...    27   5.8  
Z81487-4|CAB03998.2|  420|Caenorhabditis elegans Hypothetical pr...    27   5.8  

>AF039051-8|AAB94268.3|  309|Caenorhabditis elegans Serpentine
           receptor, class x protein7 protein.
          Length = 309

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +3

Query: 60  YFISDKRSANK*KKSFFLGWKHTKSAYIRSLITLEVAGCFFEVILLRR 203
           Y +S++R++N    S F GW   +  ++ SLI   +A   F VI L R
Sbjct: 71  YILSEERTSNL---SVFFGWMFLEGWFLESLIQPTMAINRFTVITLNR 115


>AF039051-7|AAB94267.2|  304|Caenorhabditis elegans Serpentine
           receptor, class x protein8 protein.
          Length = 304

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = +3

Query: 60  YFISDKRSANK*KKSFFLGWKHTKSAYIRSLITLEVAGCFFEVILLRRQ 206
           Y +S++R++N    S F GW      ++ SLI   +A   F VI L RQ
Sbjct: 71  YILSEERTSNL---SVFFGWVFLVGWFMESLIQPVMAVNRFTVITLNRQ 116


>AC024799-6|AAK72315.1|  306|Caenorhabditis elegans Serpentine
           receptor, class x protein5 protein.
          Length = 306

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 102 SFFLGWKHTKSAYIRSLITLEVAGCFFEVILLRRQF 209
           S FLGW H    ++ SL+   +A   F VI L R +
Sbjct: 83  SVFLGWIHINGWFMESLVQPVMALNRFVVITLNRNY 118


>Z83238-4|CAB05795.1|  341|Caenorhabditis elegans Hypothetical
           protein T08G3.5 protein.
          Length = 341

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 338 LDIYNSYLSHPFYFISFFS 282
           LDIYNS LS P + +  FS
Sbjct: 63  LDIYNSVLSIPIFIVPIFS 81


>Z81487-4|CAB03998.2|  420|Caenorhabditis elegans Hypothetical
           protein C54E10.5 protein.
          Length = 420

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
 Frame = +3

Query: 177 FFEVILLRRQFNCWVRFERETSRW---GVAYRHFQLHEREERYKVEW 308
           FFE +   + F  W    R+T+ W      +R    HE+   +K+ W
Sbjct: 193 FFEHVKFYKMFQWWEVQMRDTATWLMHSDEFRRLPSHEKIAIFKIVW 239


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,547,408
Number of Sequences: 27780
Number of extensions: 189619
Number of successful extensions: 412
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 412
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)