Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_G22
         (299 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0307 + 3382432-3382608,3382690-3382863,3383600-3383695,338...    28   1.2  
05_03_0682 - 16916437-16916686,16916761-16916822,16917082-169171...    28   1.6  
02_05_0036 - 25292150-25293124,25294021-25294206,25294704-252948...    28   1.6  
08_02_0244 - 14717897-14718037,14719054-14719155,14719238-147193...    27   2.7  
01_05_0322 + 20932151-20932470,20933076-20933146,20933259-20933266     26   6.3  
06_01_0665 - 4855870-4855956,4856407-4856482,4856794-4856910,485...    25   8.3  

>10_01_0307 +
           3382432-3382608,3382690-3382863,3383600-3383695,
           3384640-3384709,3385878-3386002,3387128-3387268,
           3387362-3387519,3387644-3387803,3390136-3390213,
           3390326-3390385,3390473-3390528,3391886-3392090,
           3394107-3394192,3394296-3394406,3394536-3394607,
           3395453-3395538,3395730-3395878,3396107-3396250,
           3396335-3396442,3396997-3397027,3397609-3397713,
           3398283-3398407,3398807-3398950,3399073-3399177,
           3400748-3400799,3401549-3401696,3401936-3402130,
           3402404-3402647,3403152-3403259,3403887-3404034,
           3405467-3405525,3405876-3405945,3407008-3407333,
           3407666-3409204,3410526-3410733,3410870-3410906,
           3411024-3411072,3411143-3411271
          Length = 2025

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = +3

Query: 24  AELKGAWIVL*V*NLHLSYLVCFLIMRNPVSRCNF*IYKMLC 149
           AEL  +W+   +  ++L + + FL   + +SRCN  ++ MLC
Sbjct: 216 AELTISWLEETLIEINLIFDILFLFFYDNLSRCNGGLWIMLC 257


>05_03_0682 -
           16916437-16916686,16916761-16916822,16917082-16917147,
           16917606-16917737,16917925-16918026,16918146-16918343,
           16918409-16918555,16918804-16918914,16919661-16920194,
           16920269-16920425,16920511-16920660,16920744-16920883,
           16921668-16921784,16922759-16922932,16923020-16923187,
           16923323-16923464,16923610-16923728,16924997-16925098,
           16925618-16925701,16926843-16927142
          Length = 1084

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 195 PSIQKHFRKNCMKCTYITFCKS 130
           P IQK  ++NC  C   + CKS
Sbjct: 280 PKIQKDHKENCCSCGLFSCCKS 301


>02_05_0036 -
           25292150-25293124,25294021-25294206,25294704-25294874,
           25295135-25295353,25295461-25295712,25295802-25295903,
           25296487-25296684,25296762-25297046,25297640-25297709,
           25297797-25297970,25298825-25298952,25299059-25299163,
           25299686-25300030,25300361-25300563,25300964-25301045,
           25301667-25301744
          Length = 1190

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 86  LFFNYAKSSIEMQFLDLQNVMYVHFMQFFLKCF 184
           LF +  KSS+E     L+ + +V   Q+ +KCF
Sbjct: 680 LFSDLDKSSVEHVLRQLRKLPWVECQQYLIKCF 712


>08_02_0244 -
           14717897-14718037,14719054-14719155,14719238-14719309,
           14719369-14719480,14719640-14719707,14719801-14719908,
           14720659-14721078,14722077-14722161,14723068-14723147,
           14723336-14723413,14724074-14724213,14724324-14724738
          Length = 606

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 113 IEMQFLDLQNVMYVHFMQFFLKCFC 187
           +E+  L+  ++ YVH + F  KCFC
Sbjct: 537 MEIDSLEEASISYVHQLTFNRKCFC 561


>01_05_0322 + 20932151-20932470,20933076-20933146,20933259-20933266
          Length = 132

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -3

Query: 168 NCMKCTYITFCKSKNC 121
           +C  C Y+ FCK + C
Sbjct: 10  SCRSCQYVNFCKREAC 25


>06_01_0665 -
           4855870-4855956,4856407-4856482,4856794-4856910,
           4857062-4857127,4858578-4858670,4858788-4858909,
           4859810-4860365,4860485-4860628,4860698-4860831,
           4861003-4861100,4861172-4861353,4861464-4861540,
           4862083-4862305,4862580-4862745,4862836-4863040,
           4864981-4865199
          Length = 854

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +2

Query: 38  CMDSVISIKFTFKLSCLFFN-YAKSSIEMQFLDLQNVMYVHFMQFF 172
           C+D     ++ + L+ L    +A  SIE   LDL + +  H M F+
Sbjct: 604 CLDRTNVAQYAYGLAALGHQLHALGSIESPELDLDSPLAHHLMHFY 649


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,043,708
Number of Sequences: 37544
Number of extensions: 89028
Number of successful extensions: 140
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 339576272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)