Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_G19
         (157 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8SWU7 Cluster: RE21802p; n=20; cellular organisms|Rep:...    45   3e-04
UniRef50_A5ZU90 Cluster: Putative uncharacterized protein; n=1; ...    31   3.7  
UniRef50_A5B4W7 Cluster: Putative uncharacterized protein; n=1; ...    31   4.9  
UniRef50_P38219 Cluster: Uncharacterized GTP-binding protein YBR...    30   8.5  

>UniRef50_Q8SWU7 Cluster: RE21802p; n=20; cellular organisms|Rep:
           RE21802p - Drosophila melanogaster (Fruit fly)
          Length = 397

 Score = 45.2 bits (102), Expect = 3e-04
 Identities = 18/24 (75%), Positives = 23/24 (95%)
 Frame = +1

Query: 85  KKVEEPEKKPLIGRVGTNLKVGIV 156
           KK +EPE+KPLIGR+GTNL++GIV
Sbjct: 4   KKHDEPERKPLIGRIGTNLRIGIV 27


>UniRef50_A5ZU90 Cluster: Putative uncharacterized protein; n=1;
           Ruminococcus obeum ATCC 29174|Rep: Putative
           uncharacterized protein - Ruminococcus obeum ATCC 29174
          Length = 441

 Score = 31.5 bits (68), Expect = 3.7
 Identities = 13/24 (54%), Positives = 19/24 (79%)
 Frame = -3

Query: 113 GFFSGSSTFLVAFRILL*FLLIMP 42
           G+FSG  TFL +F +LL FL+++P
Sbjct: 386 GYFSGLITFLRSFLLLLLFLIVLP 409


>UniRef50_A5B4W7 Cluster: Putative uncharacterized protein; n=1;
           Vitis vinifera|Rep: Putative uncharacterized protein -
           Vitis vinifera (Grape)
          Length = 120

 Score = 31.1 bits (67), Expect = 4.9
 Identities = 11/26 (42%), Positives = 20/26 (76%)
 Frame = +1

Query: 79  ATKKVEEPEKKPLIGRVGTNLKVGIV 156
           ++K  E P ++P++GR  ++LK+GIV
Sbjct: 5   SSKSKEAPAERPILGRFSSHLKIGIV 30


>UniRef50_P38219 Cluster: Uncharacterized GTP-binding protein
           YBR025C; n=49; cellular organisms|Rep: Uncharacterized
           GTP-binding protein YBR025C - Saccharomyces cerevisiae
           (Baker's yeast)
          Length = 394

 Score = 30.3 bits (65), Expect = 8.5
 Identities = 14/23 (60%), Positives = 16/23 (69%)
 Frame = +1

Query: 88  KVEEPEKKPLIGRVGTNLKVGIV 156
           K +  EKK L+GR G NLK GIV
Sbjct: 4   KKQVEEKKVLLGRPGNNLKAGIV 26


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,258,359
Number of Sequences: 1657284
Number of extensions: 2541806
Number of successful extensions: 5872
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5871
length of database: 575,637,011
effective HSP length: 32
effective length of database: 522,603,923
effective search space used: 9929474537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)