Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_G19
         (157 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1347.06c |cki1||serine/threonine protein kinase Cki1|Schizos...    23   4.1  
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    23   4.1  
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch...    23   5.4  
SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomy...    23   5.4  
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S...    23   7.2  
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa...    22   9.5  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    22   9.5  
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn...    22   9.5  

>SPBC1347.06c |cki1||serine/threonine protein kinase
           Cki1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 446

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +1

Query: 67  KIRNATKKVEEPEKK 111
           +++NATK+ E P+KK
Sbjct: 414 QVQNATKETEAPKKK 428


>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 687

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 125 RPMSGFFSGSSTFLVAFRILL*FLLIMP 42
           RP  GF +    FLVA   ++ F L++P
Sbjct: 515 RPFVGFKNSFCVFLVALTRVVSFALLIP 542


>SPAP8A3.14c |||mitochondrial inner membrane protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 677

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = -3

Query: 116 SGFFSGSSTFLVAFRILL*FLLIMPKT 36
           +GF  G  TF +AF+    + +++P++
Sbjct: 516 NGFLMGKETFQIAFKKSRGYQILLPES 542


>SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 607

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 77  MPPKRLKNPRKNHSLDVW 130
           M P+ L+    NHS+D W
Sbjct: 410 MAPEVLRGENYNHSVDYW 427


>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
           Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 624

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 43  GIINKN*SKIRNATKKVEEPEKKPLIGR 126
           G++N N  +    T K     +KPL+GR
Sbjct: 524 GVMNGNQRQFLGFTFKYRPNARKPLVGR 551


>SPCC4B3.12 |set9||histone lysine methyltransferase
           Set9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 441

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 54  INNAQNVCPFCIRYS 10
           I N+   CP CIR+S
Sbjct: 377 IQNSSAFCPKCIRHS 391


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -1

Query: 97  LQPFWWHSEF 68
           +QP WW  EF
Sbjct: 179 IQPIWWMDEF 188


>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
           synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 534

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 152 IPTFKFVPTRPMS 114
           +PT+ FVP +P S
Sbjct: 163 VPTYAFVPPKPSS 175


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 740,653
Number of Sequences: 5004
Number of extensions: 11523
Number of successful extensions: 28
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 2,362,478
effective HSP length: 32
effective length of database: 2,202,350
effective search space used: 41844650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)