Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_G19
         (157 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0224 + 21447875-21448944,21449465-21449624                       29   0.51 
02_05_0046 - 25398412-25398594,25399022-25399060,25399896-254003...    26   4.8  
11_04_0161 - 14270233-14271747                                         25   6.3  
04_03_0496 + 16549333-16549465,16549620-16550020,16550412-165508...    25   8.3  

>11_06_0224 + 21447875-21448944,21449465-21449624
          Length = 409

 Score = 29.1 bits (62), Expect = 0.51
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +1

Query: 46  IINKN*SKIRNATKKVEEPEKKPLIGR 126
           IIN + S +  ATK  ++PEK+PL+ R
Sbjct: 381 IINSDDSSMAVATKDGDDPEKQPLLSR 407


>02_05_0046 - 25398412-25398594,25399022-25399060,25399896-25400360,
            25400758-25400816,25400920-25401748,25402554-25402898,
            25402973-25403435,25403537-25403640,25403692-25403901,
            25404933-25405088,25405774-25406052,25406237-25406986,
            25407141-25407232,25407977-25408361,25408672-25408752,
            25409196-25409354,25409399-25409506,25409604-25409666,
            25409764-25409835,25409932-25410366
          Length = 1758

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +1

Query: 10   RVPNTKRTHVLGIINKN*SKIRNATKKVEEPEKKPLIGRVGT 135
            RV   ++T  +G  N+  +   +ATK+V   +K+P++G   T
Sbjct: 1085 RVEKMEQTKRVGSKNERNNDDNDATKEVPNGQKQPVLGARAT 1126


>11_04_0161 - 14270233-14271747
          Length = 504

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 152 IPTFKFVPTRPMSGFFSGSSTFLVAFR 72
           +P  +F+  R +    +GSS +L AFR
Sbjct: 184 VPGLEFLRARDLPSLLTGSSPYLPAFR 210


>04_03_0496 +
           16549333-16549465,16549620-16550020,16550412-16550880,
           16552038-16552076,16553151-16553272,16553531-16553677,
           16554097-16554186,16554274-16554398,16554567-16554772,
           16554951-16555075,16555528-16555722,16556295-16556337,
           16556762-16557267,16558198-16558570,16559772-16560062,
           16560132-16561101,16561196-16561892,16562378-16562658,
           16562731-16563400,16563860-16564034,16565103-16565659
          Length = 2204

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -3

Query: 80  AFRILL*FLLIMPKTCVLFVFG 15
           A+R +  F+ +  KTC++FV+G
Sbjct: 475 AYRTMDSFVGVREKTCIIFVYG 496


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,438,699
Number of Sequences: 37544
Number of extensions: 63754
Number of successful extensions: 129
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 14,793,348
effective HSP length: 32
effective length of database: 13,591,940
effective search space used: 258246860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)