Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_G19
         (157 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92773-1|CAB07131.1|  395|Caenorhabditis elegans Hypothetical pr...    33   0.036
Z71186-8|CAA94917.2| 1322|Caenorhabditis elegans Hypothetical pr...    29   0.59 
AL117204-38|CAL49444.1|  982|Caenorhabditis elegans Hypothetical...    27   2.4  
AL117204-32|CAJ43915.1|  145|Caenorhabditis elegans Hypothetical...    27   2.4  
AL117204-31|CAB55122.2|  727|Caenorhabditis elegans Hypothetical...    27   2.4  
U40947-4|AAZ32798.1|  883|Caenorhabditis elegans Anion/bicarbona...    26   3.1  
U40947-3|AAZ32797.1|  956|Caenorhabditis elegans Anion/bicarbona...    26   3.1  
AY954522-1|AAX34430.1|  936|Caenorhabditis elegans anion transpo...    26   3.1  
AY887906-1|AAX34418.1|  956|Caenorhabditis elegans anion transpo...    26   3.1  

>Z92773-1|CAB07131.1|  395|Caenorhabditis elegans Hypothetical
           protein W08E3.3 protein.
          Length = 395

 Score = 32.7 bits (71), Expect = 0.036
 Identities = 16/24 (66%), Positives = 18/24 (75%)
 Frame = +1

Query: 85  KKVEEPEKKPLIGRVGTNLKVGIV 156
           KK    EK  LIGR+GTNLKVGI+
Sbjct: 4   KKNVVEEKPALIGRLGTNLKVGIL 27


>Z71186-8|CAA94917.2| 1322|Caenorhabditis elegans Hypothetical
           protein F23D12.2 protein.
          Length = 1322

 Score = 28.7 bits (61), Expect = 0.59
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +1

Query: 4   SARVPNTKRTHVLGIINKN*SKIRNATKKVEEPEKK 111
           S +VP TK  HVL + +K  S +R++  + E  E K
Sbjct: 850 SVQVPVTKDNHVLVVSSKTTSTVRSSFSEQENDENK 885


>AL117204-38|CAL49444.1|  982|Caenorhabditis elegans Hypothetical
            protein Y116A8C.16c protein.
          Length = 982

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 63   LIFINNAQNVCPFCIRYSC 7
            ++F  N Q  CP+CI ++C
Sbjct: 945  VVFFGNVQFDCPWCIYFNC 963


>AL117204-32|CAJ43915.1|  145|Caenorhabditis elegans Hypothetical
           protein Y116A8C.16b protein.
          Length = 145

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 63  LIFINNAQNVCPFCIRYSC 7
           ++F  N Q  CP+CI ++C
Sbjct: 108 VVFFGNVQFDCPWCIYFNC 126


>AL117204-31|CAB55122.2|  727|Caenorhabditis elegans Hypothetical
           protein Y116A8C.16a protein.
          Length = 727

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 63  LIFINNAQNVCPFCIRYSC 7
           ++F  N Q  CP+CI ++C
Sbjct: 690 VVFFGNVQFDCPWCIYFNC 708


>U40947-4|AAZ32798.1|  883|Caenorhabditis elegans Anion/bicarbonate
           transporter familyprotein 4, isoform b protein.
          Length = 883

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/14 (78%), Positives = 11/14 (78%)
 Frame = +1

Query: 73  RNATKKVEEPEKKP 114
           RNATKK EE E KP
Sbjct: 400 RNATKKAEEAEDKP 413


>U40947-3|AAZ32797.1|  956|Caenorhabditis elegans Anion/bicarbonate
           transporter familyprotein 4, isoform a protein.
          Length = 956

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/14 (78%), Positives = 11/14 (78%)
 Frame = +1

Query: 73  RNATKKVEEPEKKP 114
           RNATKK EE E KP
Sbjct: 400 RNATKKAEEAEDKP 413


>AY954522-1|AAX34430.1|  936|Caenorhabditis elegans anion
           transporter ABTS-4b protein.
          Length = 936

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/14 (78%), Positives = 11/14 (78%)
 Frame = +1

Query: 73  RNATKKVEEPEKKP 114
           RNATKK EE E KP
Sbjct: 400 RNATKKAEEAEDKP 413


>AY887906-1|AAX34418.1|  956|Caenorhabditis elegans anion
           transporter ABTS-4a protein.
          Length = 956

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/14 (78%), Positives = 11/14 (78%)
 Frame = +1

Query: 73  RNATKKVEEPEKKP 114
           RNATKK EE E KP
Sbjct: 400 RNATKKAEEAEDKP 413


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,099,837
Number of Sequences: 27780
Number of extensions: 64661
Number of successful extensions: 196
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 12,740,198
effective HSP length: 32
effective length of database: 11,851,238
effective search space used: 225173522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)