Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_G17
(462 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar... 103 1e-23
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 69 3e-13
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha... 52 4e-08
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil... 48 9e-07
SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|c... 47 2e-06
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy... 36 0.002
SPAC4G9.20c |||mitochondrial carrier with solute carrier repeats... 36 0.003
SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|c... 36 0.003
SPAC19G12.05 |||mitochondrial citrate transporter|Schizosaccharo... 35 0.007
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo... 33 0.021
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz... 33 0.028
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce... 33 0.028
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 29 0.35
SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|... 28 0.60
SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces p... 27 1.8
SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces pomb... 27 1.8
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom... 27 1.8
SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom... 25 4.3
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo... 25 7.4
SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|ch... 25 7.4
SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces pombe... 25 7.4
SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb... 24 9.8
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi... 24 9.8
>SPBC530.10c |anc1||adenine nucleotide carrier
Anc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 103 bits (248), Expect = 1e-23
Identities = 52/84 (61%), Positives = 61/84 (72%), Gaps = 1/84 (1%)
Frame = +2
Query: 212 FAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAE-DQRYKGIVDAFVRIPNEQG 388
F DF+ GG+SAAVSKTA APIERVKLL+Q Q + RYKGI + F R E+G
Sbjct: 27 FFFDFMMGGVSAAVSKTAAAPIERVKLLIQNQDEMIRAGRLSHRYKGIGECFKRTAAEEG 86
Query: 389 LLSFWRGNFANVIRYFPTQALNFA 460
++S WRGN ANV+RYFPTQALNFA
Sbjct: 87 VISLWRGNTANVLRYFPTQALNFA 110
Score = 31.1 bits (67), Expect = 0.086
Identities = 19/82 (23%), Positives = 37/82 (45%)
Frame = +2
Query: 212 FAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPNEQGL 391
FA + +GG + A S V ++ + L S + ++++ G+VD + + GL
Sbjct: 132 FAGNLASGGAAGAASLLFVYSLDYARTRLANDAKSAKKGGERQFNGLVDVYRKTYRSDGL 191
Query: 392 LSFWRGNFANVIRYFPTQALNF 457
+RG +V+ + L F
Sbjct: 192 RGLYRGFGPSVVGIVVYRGLYF 213
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 68.9 bits (161), Expect = 3e-13
Identities = 33/78 (42%), Positives = 52/78 (66%)
Frame = +2
Query: 227 LAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPNEQGLLSFWR 406
L+GG++A VS+TAV+P+ER+K++ QVQ+ ++ Y + V+I N +GL+ F+R
Sbjct: 25 LSGGVAATVSRTAVSPLERMKIIFQVQN-------NKEYTSLTSTLVKIWNREGLIGFFR 77
Query: 407 GNFANVIRYFPTQALNFA 460
GN N +R FP A+ FA
Sbjct: 78 GNGTNCLRAFPYGAVQFA 95
Score = 40.7 bits (91), Expect = 1e-04
Identities = 25/92 (27%), Positives = 43/92 (46%)
Frame = +2
Query: 182 KMSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDA 361
K + AD AF K FL GG + + +T P + ++ QV + YK I A
Sbjct: 217 KFFSNADLTAFQKLFL-GGFTGIIGQTLTFPADVLRRRFQVNRIP---GIGHNYKNIKSA 272
Query: 362 FVRIPNEQGLLSFWRGNFANVIRYFPTQALNF 457
I +G+ F+RG +N+++ P ++ +
Sbjct: 273 IFHIYKTEGINGFFRGYSSNMLKIIPVMSITW 304
>SPAC17H9.08 |||mitochondrial coenzyme A
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 326
Score = 52.0 bits (119), Expect = 4e-08
Identities = 28/80 (35%), Positives = 44/80 (55%)
Frame = +2
Query: 218 KDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPNEQGLLS 397
K +AGG + V+K+ VAP++RVK+L Q H S + R+ G+ A I + GL
Sbjct: 19 KSGIAGGTAGCVAKSVVAPLDRVKILYQTNHASYRGYAYSRH-GLYKAIKHIYHVYGLHG 77
Query: 398 FWRGNFANVIRYFPTQALNF 457
++G+ A + R FP + F
Sbjct: 78 LYQGHTATLYRVFPYAGIKF 97
>SPBC12D12.05c |||mitochondrial carrier, calcium binding
subfamily|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 47.6 bits (108), Expect = 9e-07
Identities = 24/86 (27%), Positives = 46/86 (53%)
Frame = +2
Query: 200 DPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPN 379
DP F++GGI+ VS+T AP++R+K++L + + + + ++ + N
Sbjct: 123 DPKNNVGYFISGGIAGIVSRTCTAPLDRLKVML-ISDTGSKPSPKYPFATLLHTTKVLWN 181
Query: 380 EQGLLSFWRGNFANVIRYFPTQALNF 457
G+ SF+ GN NV++ P ++ F
Sbjct: 182 RNGIRSFFVGNGINVLKVMPESSIKF 207
Score = 39.5 bits (88), Expect = 2e-04
Identities = 19/75 (25%), Positives = 36/75 (48%)
Frame = +2
Query: 233 GGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPNEQGLLSFWRGN 412
G +S + T V P+ ++ LQ Q S A Y G +D F + +G ++G
Sbjct: 342 GALSGSTGATIVFPLNVIRTRLQTQGTS---AHPATYDGFIDCFYKTTKNEGFRGLYKGL 398
Query: 413 FANVIRYFPTQALNF 457
N+++ P+ A+++
Sbjct: 399 SPNLLKVAPSVAISY 413
Score = 32.7 bits (71), Expect = 0.028
Identities = 18/76 (23%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Frame = +2
Query: 224 FLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVR-IPNEQGLLSF 400
+LAGG++ +V++ + P++ +K +Q +S+ Q K I+ + + + G+ +
Sbjct: 232 YLAGGMAGSVAQMFIYPVDTLKFRIQCSDLSR----GQHGKSIILSNAKELYKSVGIRGY 287
Query: 401 WRGNFANVIRYFPTQA 448
+RG ++ FP A
Sbjct: 288 YRGVLVGILGMFPYSA 303
>SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 303
Score = 46.8 bits (106), Expect = 2e-06
Identities = 35/125 (28%), Positives = 63/125 (50%), Gaps = 2/125 (1%)
Frame = +2
Query: 92 GSFFVVFPFRVCRS-PSLSASIHPKRTT*SNKMSNLA-DPVAFAKDFLAGGISAAVSKTA 265
G+F++ +P + S P + + T S N DP + ++GG+S A++ +
Sbjct: 165 GAFYISYPTCIAMSIPFTAIQVATYDTCMSFLNPNAVYDPTSH---IISGGLSGAIASSL 221
Query: 266 VAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPNEQGLLSFWRGNFANVIRYFPTQ 445
P++ VK LLQ + S I E ++ KG +D I N G+ SF++G ++ P
Sbjct: 222 TTPLDVVKTLLQTRG-SSSIPEVRKCKGSLDVVRFIYNYGGIPSFFKGIRPRMVVAMPAT 280
Query: 446 ALNFA 460
A+++A
Sbjct: 281 AVSWA 285
Score = 37.5 bits (83), Expect = 0.001
Identities = 20/79 (25%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Frame = +2
Query: 227 LAGGISAAVSKTAVAPIERVKLLLQVQH-VSKQIAEDQRYKGIVDAFVRIPNEQGLLSFW 403
LAG S + + + P++ +K +Q+ + VS+ ++ + IV++ ++I + +G+ S W
Sbjct: 24 LAGAFSGILEHSVMYPVDAIKTRMQMLNGVSRSVSGN-----IVNSVIKISSTEGVYSLW 78
Query: 404 RGNFANVIRYFPTQALNFA 460
RG + ++ P+ A+ F+
Sbjct: 79 RGISSVIMGAGPSHAIYFS 97
>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 36.3 bits (80), Expect = 0.002
Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 12/108 (11%)
Frame = +2
Query: 170 T*SNKMSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVS----KQIAEDQ 337
T +N SN P + F+AGG++ + A AP++ VK LQ KQ A+ +
Sbjct: 35 TKANNASNERAPPPLSH-FIAGGVAGMLGAIATAPLDVVKTRLQSDFYKDRFLKQTAKSK 93
Query: 338 -----RYKGIVDAFVRIPN---EQGLLSFWRGNFANVIRYFPTQALNF 457
Y+ +D + + N +G + +RG N+I P +++NF
Sbjct: 94 SPLTAAYRHFMDTCIILKNVKVHEGTRALFRGLGPNLIGTIPARSINF 141
Score = 29.1 bits (62), Expect = 0.35
Identities = 19/74 (25%), Positives = 35/74 (47%)
Frame = +2
Query: 236 GISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPNEQGLLSFWRGNF 415
GI+ ++ P E V+ L+ S I +Y G++ F + EQG++ + G
Sbjct: 280 GIAKFMAAGIAYPHEVVRTRLRQ---SPSINGTPKYTGLIQCFKLVWMEQGIVGLYGGLT 336
Query: 416 ANVIRYFPTQALNF 457
A+++R P + F
Sbjct: 337 AHLLRVVPNACILF 350
>SPAC4G9.20c |||mitochondrial carrier with solute carrier
repeats|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 35.9 bits (79), Expect = 0.003
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = +2
Query: 209 AFAKDFLAGGISAAVSKTAVA-PIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPNEQ 385
+F KDFLA G+S V++ V P + VK+ LQ Q I Y +D +I +
Sbjct: 16 SFTKDFLA-GVSGGVAQVLVGQPFDCVKVRLQSQSNVSPI-----YNNALDCVKKISKNE 69
Query: 386 GLLSFWRG 409
GL +F++G
Sbjct: 70 GLAAFYKG 77
Score = 35.1 bits (77), Expect = 0.005
Identities = 20/69 (28%), Positives = 34/69 (49%)
Frame = +2
Query: 203 PVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPNE 382
PV + +++G IS + V P+E V++ LQ+Q K + Y G D +I ++
Sbjct: 109 PVTMPQYYVSGAISGLANSFLVGPVEHVRIRLQIQ-TGKNVL----YHGPWDCIKKISSQ 163
Query: 383 QGLLSFWRG 409
GL +G
Sbjct: 164 YGLSGIMKG 172
>SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 320
Score = 35.9 bits (79), Expect = 0.003
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +2
Query: 224 FLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQR-YKGIVDAFVRIPNEQGLLSF 400
FL+GG++A + T P E +K Q+Q ++ +R YK + AF I +G+
Sbjct: 27 FLSGGLAACGAVTLTNPFEVIKTRFQLQGQLTKLDPSKRIYKSVGQAFSLIARHEGIRGL 86
Query: 401 WRG 409
RG
Sbjct: 87 QRG 89
>SPAC19G12.05 |||mitochondrial citrate
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 291
Score = 34.7 bits (76), Expect = 0.007
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = +2
Query: 224 FLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPNEQGLLSFW 403
FL G ++ ++ PI+ VK +Q SK+ YK + +I + GLL FW
Sbjct: 207 FLVGSVAGIITVYCTQPIDTVKSRMQSLSASKE------YKNSIHCAYKILTQDGLLRFW 260
Query: 404 RG 409
G
Sbjct: 261 SG 262
>SPBC1604.04 |||thiamine pyrophosphate
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 314
Score = 33.1 bits (72), Expect = 0.021
Identities = 20/77 (25%), Positives = 35/77 (45%)
Frame = +2
Query: 227 LAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPNEQGLLSFWR 406
LAGGIS+ + + +AP + +K+ +Q+ S + F ++G+ + WR
Sbjct: 21 LAGGISSVICRFMIAPFDVIKIRMQITQSS-----------LRPVFKETVQKEGVRALWR 69
Query: 407 GNFANVIRYFPTQALNF 457
GN + Y A F
Sbjct: 70 GNVVAELLYLVYGAAEF 86
Score = 27.5 bits (58), Expect = 1.1
Identities = 19/71 (26%), Positives = 31/71 (43%)
Frame = +2
Query: 227 LAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPNEQGLLSFWR 406
L+G I+ A SK + P++ V LQ YK D F+ I G+ +R
Sbjct: 197 LSGVIAGAGSKAIMFPVDTVVKTLQTF--------PSNYKSFKDCFLSIYRNSGIKGLYR 248
Query: 407 GNFANVIRYFP 439
G ++++ P
Sbjct: 249 GLSVSMLKVAP 259
>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 298
Score = 32.7 bits (71), Expect = 0.028
Identities = 23/87 (26%), Positives = 37/87 (42%)
Frame = +2
Query: 200 DPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPN 379
D + F F AG ++ + P++ VK +Q+ V K Y G D +I
Sbjct: 4 DNIPFPVTFAAGAVAGISEVLTLYPLDVVKTRMQLS-VGKS-----DYNGTFDCLKKIVK 57
Query: 380 EQGLLSFWRGNFANVIRYFPTQALNFA 460
+G +RG ++ P +AL FA
Sbjct: 58 NEGPHRLYRGILPPILMEAPKRALKFA 84
Score = 31.9 bits (69), Expect = 0.049
Identities = 19/73 (26%), Positives = 32/73 (43%)
Frame = +2
Query: 215 AKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPNEQGLL 394
A L G + V P E +K+ LQ + +Y G VD F +I ++ +L
Sbjct: 105 ALSILTGSCAGFTETFVVVPFELMKIRLQ------DVKNASKYNGTVDCFTKIVKQERIL 158
Query: 395 SFWRGNFANVIRY 433
+ + G A + R+
Sbjct: 159 ALYNGFEATMWRH 171
>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 32.7 bits (71), Expect = 0.028
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Frame = +2
Query: 218 KDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQR---YKGIVDAFVRIPNEQG 388
KD +AGG + S VAP++ VK Q Q + G + + I + +G
Sbjct: 7 KDAIAGGAAGLASSLVVAPLDVVKTRKQAQKAFYSTGGGKNTMVLGGTLSSMRTIFHNEG 66
Query: 389 LLSFWRGNFANVIRYFPTQALNF 457
+ +RG ++ Y P+ ++ F
Sbjct: 67 IAGLYRGVGPMMLGYLPSWSIYF 89
Score = 25.8 bits (54), Expect = 3.2
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 341 YKGIVDAFVRIPNEQGLLSFWRGNFANV 424
Y DAF +I +GL +F+RG F ++
Sbjct: 230 YNNTFDAFRKIYKYEGLAAFYRGLFPSL 257
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 29.1 bits (62), Expect = 0.35
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3
Query: 327 PRTNATRVSSTPSSAFPMSRVCSHSGVVTSP 419
P T A V S P+S+FP+ + SG ++SP
Sbjct: 310 PPTTAPAVVSPPASSFPLMSSAATSGNISSP 340
>SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr
3|||Manual
Length = 834
Score = 28.3 bits (60), Expect = 0.60
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = +1
Query: 10 RIXKKGTHLPLCSCDHRITPNLLIKNRGFVFRGFSIPCVPKSFLVRKYPPKEDHI 174
R+ +K L + +C HR + NR + GFS SF VR+ +E I
Sbjct: 234 RLSRKFRFLKV-TCQHRNNVGTDLANRVYSIEGFSSKSASDSFFVRRLNGEEQKI 287
>SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 335
Score = 26.6 bits (56), Expect = 1.8
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = +2
Query: 227 LAGGISAAVSKTAVAPIERVKLLLQV--QHVSKQIAEDQRYKGIVDAFVRIPNEQGLLSF 400
+AG + +S T V+PIE + +Q H A + + + D + +++G+L+
Sbjct: 141 IAGASARTISATIVSPIELFRTRVQAVGGHYPPGHAREIANE-VFDGLKLMIHQKGILNL 199
Query: 401 WRGNFANVIRYFPTQA 448
W G + R P A
Sbjct: 200 WSGVSVTLWRDVPFSA 215
>SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 710
Score = 26.6 bits (56), Expect = 1.8
Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
Frame = +2
Query: 218 KDFLAGGISAAVSKT--AVAPIERVKLLLQVQHVSK-QIAEDQRYKGIVDAFVRIPNEQG 388
KD L GG + V K P + +QV K + A K + D + + G
Sbjct: 167 KDHLVGGCADGVIKVWDLSTPNSAIISRMQVDRARKGEAALIWAVKSLRDGTIVSADSSG 226
Query: 389 LLSFWRGNFANVIRYF 436
+ FW G F + + F
Sbjct: 227 AVKFWNGKFFTLSQSF 242
>SPBC3F6.05 |rga1||GTPase activating protein
Rga1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1150
Score = 26.6 bits (56), Expect = 1.8
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +1
Query: 34 LPLCSCDHRITPNLLIKNRGFVFRGFSIPCVPKSFLVRKY 153
+PLC D+ +LL + G RG+ I + K F + +
Sbjct: 165 VPLCETDYFRRLDLLCASCGMALRGYYITALNKKFHIEHF 204
>SPBC1703.13c |||inorganic phosphate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 311
Score = 25.4 bits (53), Expect = 4.3
Identities = 19/84 (22%), Positives = 34/84 (40%)
Frame = +2
Query: 182 KMSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDA 361
K L P + L G ++ + +A+ P++ +K QV Y G +
Sbjct: 13 KTLQLYTPQYYGLCTLGGLLACGTTHSAITPLDLIKCRKQVN--------PNIYPGNIAG 64
Query: 362 FVRIPNEQGLLSFWRGNFANVIRY 433
F I +++GL + G +I Y
Sbjct: 65 FKTILSKEGLRGLYTGGMPTLIGY 88
>SPCC126.09 |||vacuolar membrane zinc transporter
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 418
Score = 24.6 bits (51), Expect = 7.4
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +3
Query: 321 RSPRTNATRVSSTPSSAFPMSRV 389
RSP + R+SS SS P SRV
Sbjct: 168 RSPPASCKRLSSCESSGSPSSRV 190
>SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 271
Score = 24.6 bits (51), Expect = 7.4
Identities = 9/31 (29%), Positives = 16/31 (51%)
Frame = +2
Query: 350 IVDAFVRIPNEQGLLSFWRGNFANVIRYFPT 442
+++ + +GL F+RG + V Y PT
Sbjct: 119 VINTISTLARSEGLKGFYRGYWMGVAIYLPT 149
>SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 408
Score = 24.6 bits (51), Expect = 7.4
Identities = 6/11 (54%), Positives = 9/11 (81%)
Frame = -1
Query: 336 WSSAICLLTCW 304
W+ ICL++CW
Sbjct: 141 WAPGICLISCW 151
>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 394
Score = 24.2 bits (50), Expect = 9.8
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = -2
Query: 212 TRLDRRDSTFCSIMWSSLGGYLRTRK 135
TRL DS CS + S GG R K
Sbjct: 106 TRLKENDSRLCSPLASPTGGLKRPAK 131
>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 970
Score = 24.2 bits (50), Expect = 9.8
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -2
Query: 221 LWRTRLDRRDSTFCSI 174
LW+ R D RD CSI
Sbjct: 492 LWKNRKDFRDKLICSI 507
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,919,303
Number of Sequences: 5004
Number of extensions: 37188
Number of successful extensions: 155
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -