Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_G17
         (462 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   169   1e-44
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   169   1e-44
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   1.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   1.2  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   1.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   1.6  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   4.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   4.9  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  169 bits (411), Expect = 1e-44
 Identities = 77/92 (83%), Positives = 86/92 (93%)
 Frame = +2

Query: 185 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAF 364
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+E+QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 365 VRIPNEQGLLSFWRGNFANVIRYFPTQALNFA 460
           VRIP EQG LS+WRGN ANVIRYFPTQALNFA
Sbjct: 61  VRIPKEQGFLSYWRGNLANVIRYFPTQALNFA 92



 Score = 25.0 bits (52), Expect = 0.40
 Identities = 13/53 (24%), Positives = 28/53 (52%)
 Frame = +2

Query: 272 PIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPNEQGLLSFWRGNFANVIR 430
           P + V+  + +Q  S +   +  YK  +  +  I   +G  +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  169 bits (411), Expect = 1e-44
 Identities = 77/92 (83%), Positives = 86/92 (93%)
 Frame = +2

Query: 185 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAF 364
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+E+QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 365 VRIPNEQGLLSFWRGNFANVIRYFPTQALNFA 460
           VRIP EQG LS+WRGN ANVIRYFPTQALNFA
Sbjct: 61  VRIPKEQGFLSYWRGNLANVIRYFPTQALNFA 92



 Score = 25.0 bits (52), Expect = 0.40
 Identities = 13/53 (24%), Positives = 28/53 (52%)
 Frame = +2

Query: 272 PIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPNEQGLLSFWRGNFANVIR 430
           P + V+  + +Q  S +   +  YK  +  +  I   +G  +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -3

Query: 451 ERLSREVPDDIGEVTTPE 398
           ER +RE+PDD+ +   P+
Sbjct: 553 ERANRELPDDLRQKVLPD 570


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -3

Query: 451 ERLSREVPDDIGEVTTPE 398
           ER +RE+PDD+ +   P+
Sbjct: 553 ERANRELPDDLRQKVLPD 570


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 52  DHRITPNLLIKNRGFVFRGFSIPCVPKSFLVRKYPP 159
           D R++P   I+NR  +  G S P   +     K+PP
Sbjct: 374 DLRMSPLPSIRNRSGLVSGSSTPGTGREHDPAKFPP 409


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = -3

Query: 433 VPDDIGEVTTPE*EQTLLIGNADEGVDDTLVAL--VLGDLF 317
           +PD   E+T P  E+T+ I N  E + +T V    +L D F
Sbjct: 364 IPDK--EITVPSNEETIDINNGAELMQETHVCFFSLLRDAF 402


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -1

Query: 327 AICLLTCWT 301
           A C+L+CWT
Sbjct: 103 ATCVLSCWT 111


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -1

Query: 327 AICLLTCWT 301
           A C+L+CWT
Sbjct: 156 ATCVLSCWT 164


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,602
Number of Sequences: 438
Number of extensions: 2591
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12312900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)