Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_G16
(535 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase |... 86 4e-18
SPCC794.01c |||glucose-6-phosphate 1-dehydrogenase |Schizosaccha... 55 8e-09
SPAC3C7.13c |||glucose-6-phosphate 1-dehydrogenase |Schizosaccha... 46 3e-06
SPBC15D4.15 |pho2||4-nitrophenylphosphatase |Schizosaccharomyces... 28 1.0
SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces pom... 27 1.3
SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit... 26 4.1
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom... 25 5.4
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 25 9.4
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei... 25 9.4
>SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 500
Score = 85.8 bits (203), Expect = 4e-18
Identities = 42/98 (42%), Positives = 57/98 (58%)
Frame = +2
Query: 62 TELDLTYSTRYKEASVPDAYERLILDVFTGTQMHFVRNDELKEAWRIFTPILKELEEKRV 241
T+LDLTYS R+K + +AYE L LD F G Q F R DEL+ AW + P+LK +EE++
Sbjct: 398 TDLDLTYSRRFKNMKLHEAYEALFLDAFAGDQSRFARIDELECAWSLVDPLLKYMEEEKP 457
Query: 242 KPLPYVYGSRGPKEADGKLLEYDFKYSGSYKWQKPAES 355
P PY YGS GP+ L ++ + Y + P S
Sbjct: 458 VPEPYEYGSDGPECLYSFLKKFGYIYDSPDYYDYPVMS 495
>SPCC794.01c |||glucose-6-phosphate 1-dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 475
Score = 54.8 bits (126), Expect = 8e-09
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Frame = +2
Query: 68 LDLTYSTRYKEASVPDAYERLILDVFTGTQMHFVRNDELKEAWRIFTPILKELEEKRVKP 247
LD+ Y + + + AYE +I D G HF+ +DE++ +W+IF +L + + P
Sbjct: 392 LDVKYPEAFPDTWIHKAYEVVIADAINGKHTHFISDDEVRTSWKIFDDVLDTTGD--LSP 449
Query: 248 LPYVYGS-RGP 277
LPY +GS GP
Sbjct: 450 LPYAFGSHHGP 460
>SPAC3C7.13c |||glucose-6-phosphate 1-dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 473
Score = 46.4 bits (105), Expect = 3e-06
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Frame = +2
Query: 74 LTYSTRYKEASVP--DAYERLILDVFTGTQMHFVRNDELKEAWRIFTPILKELEEKRVKP 247
L Y+ ++K+ D YE L D G F+R DE++ AW+I+ IL + KP
Sbjct: 394 LNYNEQFKDLMKEKRDGYEILFEDAIRGDPTKFIRYDEVEYAWKIWDEIL----DSPKKP 449
Query: 248 LPYVYGSRGPK 280
+PY GS GP+
Sbjct: 450 IPYPAGSDGPE 460
>SPBC15D4.15 |pho2||4-nitrophenylphosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 298
Score = 27.9 bits (59), Expect = 1.0
Identities = 18/65 (27%), Positives = 29/65 (44%)
Frame = -1
Query: 196 PSLFQLIITHEMHLCTRKYIQN*SFICIRNTSFFITSTICKIKFCXPTKSNFIPGDFDII 17
PS+ ++ +MH+ KY ++ N +F +T+ PT F+PG I
Sbjct: 149 PSVGAVLCGMDMHVTYLKYCMAFQYLQDPNCAFLLTNQDSTF----PTNGKFLPGSGAIS 204
Query: 16 LPLRF 2
PL F
Sbjct: 205 YPLIF 209
>SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 412
Score = 27.5 bits (58), Expect = 1.3
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -3
Query: 188 LSTHHYARNASVYP*IHPKLVFHMHQEH 105
L+TH Y IHP +V H HQ++
Sbjct: 72 LNTHRTISKYEAYGGIHPTIVIHEHQKN 99
>SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit
Prp3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 542
Score = 25.8 bits (54), Expect = 4.1
Identities = 9/29 (31%), Positives = 20/29 (68%)
Frame = +2
Query: 158 MHFVRNDELKEAWRIFTPILKELEEKRVK 244
MH + +D +K+ +I + K++EE+R++
Sbjct: 339 MHVLGDDAIKDPTKIEAEVRKQVEERRLR 367
>SPAC23H3.05c |swd1||COMPASS complex subunit
Swd1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 398
Score = 25.4 bits (53), Expect = 5.4
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 179 ELKEAWRIFTPILKELEE 232
E KE+W F P +ELEE
Sbjct: 329 EQKESWSAFAPDFQELEE 346
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 24.6 bits (51), Expect = 9.4
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -2
Query: 309 SYSNSLPSASLGPLDP*T 256
SYS + P+ S+GPL P T
Sbjct: 546 SYSTTTPAFSIGPLTPMT 563
>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
Vps41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 886
Score = 24.6 bits (51), Expect = 9.4
Identities = 9/24 (37%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +2
Query: 26 EITWYEI*FSWXTELDLT-YSTRY 94
+I+WY +W ++L +T YST +
Sbjct: 173 KISWYTTYIAWASDLGITVYSTEF 196
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,064,518
Number of Sequences: 5004
Number of extensions: 40357
Number of successful extensions: 108
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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