Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_G16
(535 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0298 + 24228569-24228763,24229792-24229900,24230001-242300... 112 1e-25
02_04_0500 + 23500769-23500951,23501200-23501285,23501442-235014... 109 1e-24
07_03_0018 - 12490940-12491195,12491575-12491775,12492174-124924... 94 7e-20
03_04_0053 + 16873735-16873927,16874011-16874162,16874286-168743... 87 1e-17
03_02_0812 - 11439258-11439409,11439537-11439612,11439860-114400... 73 2e-13
10_06_0180 + 11526139-11526172,11526365-11527218 28 4.1
>04_04_0298 + 24228569-24228763,24229792-24229900,24230001-24230069,
24230159-24230262,24230361-24230490,24231270-24231374,
24231479-24231689,24231917-24231927,24232331-24232341,
24233863-24233979,24234376-24234441,24234728-24234790,
24236577-24236652,24238003-24238064,24238573-24238658,
24238978-24239026,24239099-24239279,24239448-24239596,
24239682-24239750,24240920-24240991,24241122-24241269,
24241403-24241498,24242024-24242094,24242223-24242338,
24242453-24242498,24242611-24242781
Length = 860
Score = 112 bits (270), Expect = 1e-25
Identities = 50/95 (52%), Positives = 64/95 (67%)
Frame = +2
Query: 62 TELDLTYSTRYKEASVPDAYERLILDVFTGTQMHFVRNDELKEAWRIFTPILKELEEKRV 241
+ELDL+Y RY+ +P+AYERLILD G Q HFVR DELK AW+IFTP+L +++E +V
Sbjct: 763 SELDLSYGMRYQNVKIPEAYERLILDTIRGDQQHFVRRDELKAAWQIFTPLLHDIDEGKV 822
Query: 242 KPLPYVYGSRGPKEADGKLLEYDFKYSGSYKWQKP 346
K +PY GSRGPKEAD + + Y W P
Sbjct: 823 KSIPYQPGSRGPKEADELSERVGYMQTHGYIWIPP 857
>02_04_0500 +
23500769-23500951,23501200-23501285,23501442-23501490,
23501560-23501746,23502214-23502371,23502447-23502515,
23502692-23502750,23503140-23503176,23503493-23503564,
23503694-23503841,23504124-23504219,23505042-23505181,
23505304-23505419,23505614-23505659,23505747-23505923
Length = 540
Score = 109 bits (263), Expect = 1e-24
Identities = 49/98 (50%), Positives = 64/98 (65%)
Frame = +2
Query: 62 TELDLTYSTRYKEASVPDAYERLILDVFTGTQMHFVRNDELKEAWRIFTPILKELEEKRV 241
+ELDL+Y RY++ +P+AYERLILD G Q HFVR DELK AW IFTP+L ++++ +V
Sbjct: 441 SELDLSYGLRYQDVKIPEAYERLILDTIRGDQQHFVRRDELKAAWEIFTPLLHDIDDGKV 500
Query: 242 KPLPYVYGSRGPKEADGKLLEYDFKYSGSYKWQKPAES 355
K LPY G+RGP EAD + + Y W P S
Sbjct: 501 KALPYKPGTRGPPEADELSKRMGYVQTHGYVWIPPTLS 538
>07_03_0018 -
12490940-12491195,12491575-12491775,12492174-12492403,
12492624-12492744,12492823-12492972,12493106-12493314,
12494120-12494234,12494346-12494440,12494523-12494758,
12496182-12496338
Length = 589
Score = 93.9 bits (223), Expect = 7e-20
Identities = 45/94 (47%), Positives = 61/94 (64%)
Frame = +2
Query: 62 TELDLTYSTRYKEASVPDAYERLILDVFTGTQMHFVRNDELKEAWRIFTPILKELEEKRV 241
+ L+L Y+ RY + +PDAYERL+LD G + F+R+DEL AW +FTP+LKELEEKR+
Sbjct: 496 SNLNLHYAARYSK-EIPDAYERLLLDAIEGERRLFIRSDELDAAWELFTPLLKELEEKRI 554
Query: 242 KPLPYVYGSRGPKEADGKLLEYDFKYSGSYKWQK 343
P Y YGSRGP A +Y+ ++ QK
Sbjct: 555 APELYPYGSRGPVGAHYLAAKYNVRWGDLTTEQK 588
>03_04_0053 +
16873735-16873927,16874011-16874162,16874286-16874380,
16874704-16874818,16875054-16875343,16875436-16875585,
16876478-16876598,16876671-16876942,16877466-16877937
Length = 619
Score = 86.6 bits (205), Expect = 1e-17
Identities = 40/72 (55%), Positives = 51/72 (70%)
Frame = +2
Query: 62 TELDLTYSTRYKEASVPDAYERLILDVFTGTQMHFVRNDELKEAWRIFTPILKELEEKRV 241
++L+L YS RY A +PDAYERL+LD G + F+R+DEL AW IFTP+L +LE +V
Sbjct: 531 SDLNLLYSERYP-AEIPDAYERLLLDAIEGERRLFIRSDELDAAWAIFTPVLADLEANKV 589
Query: 242 KPLPYVYGSRGP 277
P Y YGSRGP
Sbjct: 590 APELYPYGSRGP 601
>03_02_0812 -
11439258-11439409,11439537-11439612,11439860-11440076,
11440150-11440350,11440673-11440872,11440955-11441075,
11441596-11441636,11441714-11441822,11442037-11442281,
11442382-11442496,11442970-11443064,11444279-11444535,
11444780-11444999,11445473-11445556
Length = 710
Score = 72.5 bits (170), Expect = 2e-13
Identities = 32/75 (42%), Positives = 47/75 (62%)
Frame = +2
Query: 62 TELDLTYSTRYKEASVPDAYERLILDVFTGTQMHFVRNDELKEAWRIFTPILKELEEKRV 241
+EL+L Y RY +PD+YE L+LDV G F+R+DE+ AW + TP++ E+++ R+
Sbjct: 554 SELNLLYRDRYN-VELPDSYEHLLLDVLDGDSHLFMRSDEVAAAWNVLTPLIHEIDQNRI 612
Query: 242 KPLPYVYGSRGPKEA 286
P Y G RGP A
Sbjct: 613 APELYEAGGRGPVNA 627
>10_06_0180 + 11526139-11526172,11526365-11527218
Length = 295
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -2
Query: 384 NHHH*FLHHYDSAGFCHLYEPEYLKSYSNSLPS 286
+HHH YD+AGF + P + S S PS
Sbjct: 211 HHHHQTPASYDTAGFTSFFAPSTTLTSSLSFPS 243
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,997,516
Number of Sequences: 37544
Number of extensions: 220614
Number of successful extensions: 419
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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