Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_G15
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo...    27   1.2  
SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr 3...    26   2.7  
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ...    26   3.6  
SPAC1002.21 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   6.3  
SPCC1739.12 |ppe1|esp1, ppx1|serine/threonine protein phosphatas...    25   8.4  

>SPCC777.13 |vps35||retromer complex subunit
           Vps35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 350 FFNV*LNILYKNSTSKNLCL 291
           F N  +N+LYKN  S  LCL
Sbjct: 537 FVNTCINVLYKNGDSLELCL 556


>SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 449

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +1

Query: 415 WNLYRKQKPFSPRRQVTDITFSS 483
           WN+  +QKPFS +  ++D+  +S
Sbjct: 406 WNVRERQKPFSRKPSLSDVKDTS 428


>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 463

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 353 LFYGNSTQEFCTVRKHTETQNGIYIGNKSHLV 448
           LF   S   F T +KH +  + +YI  + +LV
Sbjct: 211 LFCAASFSSFDTCKKHMKASHSLYIPEREYLV 242


>SPAC1002.21 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 148

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 7/26 (26%), Positives = 14/26 (53%)
 Frame = -2

Query: 90  AHCFDRNLTCC*VTMWSWMVNILSLS 13
           +HC +     C V  W+W++++   S
Sbjct: 87  SHCLEEKKFFCNVNNWNWLMSVSKYS 112


>SPCC1739.12 |ppe1|esp1, ppx1|serine/threonine protein phosphatase
           Ppe1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 305

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 425 YKFHFVFLCVFELCKIPAYCYR 360
           YK+HF    +  +   P YCYR
Sbjct: 242 YKYHFADKNLVTVWSAPNYCYR 263


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,998,880
Number of Sequences: 5004
Number of extensions: 38622
Number of successful extensions: 80
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)