Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_G15
         (499 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0734 + 6729401-6729743,6729997-6730190,6730275-6730461,673...    29   2.7  

>08_01_0734 +
           6729401-6729743,6729997-6730190,6730275-6730461,
           6730880-6731073,6731435-6731827,6731913-6731978,
           6732061-6732429,6732517-6732568,6733393-6733397
          Length = 600

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 123 FLYKIVFDTV*AHCFDRNLTCC 58
           FL+ ++F T+  H ++  LTCC
Sbjct: 480 FLFSLLFHTILVHHYNETLTCC 501


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,808,443
Number of Sequences: 37544
Number of extensions: 201654
Number of successful extensions: 351
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 351
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)