Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_G11
         (538 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    34   0.015
SPBC336.08 |spc24||spindle pole body protein Spc24|Schizosacchar...    31   0.11 
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    29   0.33 
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   1.3  
SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   1.8  
SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces ...    26   4.1  
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity...    26   4.1  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    26   4.1  
SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate dehydrogenase|Sch...    25   9.5  
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ...    25   9.5  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    25   9.5  

>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 33.9 bits (74), Expect = 0.015
 Identities = 40/155 (25%), Positives = 61/155 (39%)
 Frame = -3

Query: 515 ARXDTNRCAQASASSSFWGTIPFLAVSTRHVTLFTTRDSFRVVHVTILSPLGSLTITQGF 336
           A   TN    AS +SS        A S+   +  TT  S     +T  S L S +IT   
Sbjct: 92  ASSSTNSTTSASPTSS--SLTSSSATSSSLASSSTTSSSLASSSITS-SSLASSSITS-- 146

Query: 335 SALISRVNLNCDFSSGITNXXXXXXXXXXXXAMKWRPSFAAPLSYHARTSSSLATTQNCG 156
           S+L S    +   +S  TN            +     S ++  + ++ TSSSLA++    
Sbjct: 147 SSLASSSTTSSSLASSSTNSTTSATPTSSATSS----SLSSTAASNSATSSSLASSSLNS 202

Query: 155 VASPAALHTRMSSNGSSRVTTSLAQGTKHWQPMTS 51
             S  A  + +SS  +S   TS +  +      TS
Sbjct: 203 TTSATATSSSLSSTAASNSATSSSLASSSLNSTTS 237


>SPBC336.08 |spc24||spindle pole body protein
           Spc24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 198

 Score = 31.1 bits (67), Expect = 0.11
 Identities = 25/104 (24%), Positives = 41/104 (39%)
 Frame = +1

Query: 106 DDPLELMRVCRAAGLATPQFWVVANDEDVRAWYDSGAAKEGRHFIASAGARGARDRLRFV 285
           D P+ELMR   A     P    ++N +D+RA   S   KE      S        R   +
Sbjct: 3   DSPIELMRSTLAGFQIAPDVKTISNIQDIRAQIQSFREKE---LEGSQTKFKVLSRKLEI 59

Query: 286 MPEEKSQFRFTREISAEKPWVIVREPKGERIVTCTTLKESRVVN 417
             +     + T E S     ++ RE +  RI     + E+ +++
Sbjct: 60  STQAMESLKQTAESSQHAEEILSREKEKFRIAKLLNITENEIMS 103


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
            orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 29.5 bits (63), Expect = 0.33
 Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = -2

Query: 270  VPSASSSGASNEMASFLRGTTVIPRSHILIVSHDPELWG--GESSGSTYT 127
            V   SSSG    + S    +TV+P S +  V+H     G  GESS  TYT
Sbjct: 1398 VTETSSSGYYTTIVSSTVVSTVVPGSTVYPVTHVTTTTGVSGESSAFTYT 1447


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 22/94 (23%), Positives = 42/94 (44%)
 Frame = -3

Query: 371 SPLGSLTITQGFSALISRVNLNCDFSSGITNXXXXXXXXXXXXAMKWRPSFAAPLSYHAR 192
           S L S +++   S   S  + +   SS  ++            + K   SF++ +S  + 
Sbjct: 319 STLSSSSMSSSSSFSSSPTSSSSTISSS-SSSPSSSSFSSTTSSSKSSSSFSSTVSSSSS 377

Query: 191 TSSSLATTQNCGVASPAALHTRMSSNGSSRVTTS 90
           TSSS  T+ +   + PA+  +  SS  S + ++S
Sbjct: 378 TSSSTLTSSSSSSSRPASSSSHSSSLSSHKSSSS 411


>SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 340

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = -2

Query: 225 FLRGTTV-IPRSHILIVSHDPELWGGESSGSTYTHEFQRIVKSD 97
           FLR T + +P S I+ +S DP  W   +    Y   FQ+    D
Sbjct: 181 FLRTTLLSVPTSSIVSISADPTSWNNLNVLMKYNFMFQKFKPRD 224


>SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +2

Query: 5   EERLQRTMTLWRNLIWRSLAASASF 79
           EERL++  ++W +++ RS+  +A F
Sbjct: 307 EERLEKPYSVWTSMMQRSIQTAAYF 331


>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ctf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -3

Query: 191 TSSSLATTQNCGVASPAALHTRMSSNGSSRVTTSLAQGTKHWQPMTS 51
           ++SSL  +Q  G+ SPA   + M++N +  + ++          MTS
Sbjct: 124 STSSLPASQGGGMPSPAIYSSSMATNLNKNINSTSVPAYNFHNSMTS 170


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = -2

Query: 381 NNSLPFGLPDNHPRFFSANFTGESELRLFLWHYKSQTVPSASSSGASNEMASFLR 217
           N+S+P   P  H    + +FT E+ L+  ++ + + +    SSS A N     +R
Sbjct: 17  NHSVP-SFPPFHSSVANIHFTKENNLKSNIFEHNNNSPTLRSSSVACNTCLKIIR 70


>SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate
           dehydrogenase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 351 NHPRFFSANFTGESELRLFLW 289
           NHP F   +FTG + +   LW
Sbjct: 257 NHPEFAGLHFTGSTAVFRSLW 277


>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 932

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +1

Query: 439 TARKGIVPQKDEEADAWAQRFV-SXLAPARXMTG 537
           T  +GI+P+  EEA  WA +     LA A+   G
Sbjct: 838 TGSEGILPKNGEEALLWAHKAACKGLAKAQYAVG 871


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 3/23 (13%)
 Frame = +3

Query: 354 QGAQRGENCYVYDSE---RISCC 413
           +G   GEN ++YDS+    +SCC
Sbjct: 843 RGDSDGENVFIYDSDIKRIVSCC 865


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,364,752
Number of Sequences: 5004
Number of extensions: 48703
Number of successful extensions: 190
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)