Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_G11
         (538 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY358188-1|AAQ88555.1|  134|Homo sapiens ESFI5812 protein.             32   1.5  
U80457-1|AAB62397.1|  570|Homo sapiens transcription factor SIM2...    31   2.0  
AJ001858-1|CAA05055.1|  463|Homo sapiens human SIM2 protein.           31   2.0  
BC025998-1|AAH25998.1|  605|Homo sapiens family with sequence si...    30   4.5  

>AY358188-1|AAQ88555.1|  134|Homo sapiens ESFI5812 protein.
          Length = 134

 Score = 31.9 bits (69), Expect = 1.5
 Identities = 23/102 (22%), Positives = 46/102 (45%), Gaps = 7/102 (6%)
 Frame = -2

Query: 492 RPGVCFF-VLLGHNPLSRGVHSACDIIHNTRFFQSRTR------NNSLPFGLPDNHPRFF 334
           R G+CFF +LL H+ L  G H    +  ++ + ++ T+         LP    + H    
Sbjct: 21  RRGLCFFLILLSHSSLQLGTHMQTGLTQHSGWVRAGTQIRAACPGPQLPHCGQEFHTHMQ 80

Query: 333 SANFTGESELRLFLWHYKSQTVPSASSSGASNEMASFLRGTT 208
            ++   ++E     W ++++  P   + GA  ++A    GT+
Sbjct: 81  RSHKVSQTE-HSTAWRWQARVWPLHQAGGAGRQLAGGGAGTS 121


>U80457-1|AAB62397.1|  570|Homo sapiens transcription factor SIM2
           short form protein.
          Length = 570

 Score = 31.5 bits (68), Expect = 2.0
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
 Frame = -2

Query: 411 NTRFFQSRTRNNSLPFGLPDNHP----RFFSANFTGESELRLFLWHYKSQTVPSASS 253
           ++ FF S+       FG P   P    RFF +      E +   WHY +  VPS+SS
Sbjct: 450 DSHFFSSKKPMLPAKFGQPQGSPCEVARFFLSTMPASGECQ---WHYANPLVPSSSS 503


>AJ001858-1|CAA05055.1|  463|Homo sapiens human SIM2 protein.
          Length = 463

 Score = 31.5 bits (68), Expect = 2.0
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
 Frame = -2

Query: 411 NTRFFQSRTRNNSLPFGLPDNHP----RFFSANFTGESELRLFLWHYKSQTVPSASS 253
           ++ FF S+       FG P   P    RFF +      E +   WHY +  VPS+SS
Sbjct: 387 DSHFFSSKKPMLPAKFGQPQGSPCEVARFFLSTMPASGECQ---WHYANPLVPSSSS 440


>BC025998-1|AAH25998.1|  605|Homo sapiens family with sequence
           similarity 71, member B protein.
          Length = 605

 Score = 30.3 bits (65), Expect = 4.5
 Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 4/39 (10%)
 Frame = -2

Query: 264 SASSSGA----SNEMASFLRGTTVIPRSHILIVSHDPEL 160
           SASS+GA    +++++SFLR   V P S   + SHD E+
Sbjct: 520 SASSTGALQKKASKISSFLRSLRVTPGSKTRVTSHDREV 558


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,241,249
Number of Sequences: 237096
Number of extensions: 1886272
Number of successful extensions: 8578
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8577
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5273648886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)