Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_G11
         (538 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016452-13|AAB66010.1|  303|Caenorhabditis elegans Hypothetical...    29   2.8  
U39676-3|AAB37032.2|  941|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>AF016452-13|AAB66010.1|  303|Caenorhabditis elegans Hypothetical
           protein T05H4.4 protein.
          Length = 303

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -2

Query: 423 DIIHNTRFFQSRTRNNSLPFGLPDNHPRFFSANFTGESELRLF 295
           +I HNTR F+    +     GLP  H  + SAN  G+  +R +
Sbjct: 54  EISHNTRKFRFGLPSKDHILGLPIGHHVYLSANIGGKLIVRSY 96


>U39676-3|AAB37032.2|  941|Caenorhabditis elegans Hypothetical
           protein C23F12.2 protein.
          Length = 941

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 431 EWTPRERGLCPKRTKKQTPGRSDL 502
           EWTP+E GLC    +K   G  +L
Sbjct: 883 EWTPKEPGLCVGNMQKGCEGVQNL 906


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,410,128
Number of Sequences: 27780
Number of extensions: 292550
Number of successful extensions: 832
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)